Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC17.6■□□□□ 0.41
Msh4Q99MT2 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Msh4Q99MT2 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Msh4Q99MT2 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
Msh4Q99MT2 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Msh4Q99MT2 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Msh4Q99MT2 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Msh4Q99MT2 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Msh4Q99MT2 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Msh4Q99MT2 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Msh4Q99MT2 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Msh4Q99MT2 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC17.59■□□□□ 0.41
Msh4Q99MT2 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Msh4Q99MT2 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Msh4Q99MT2 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
Msh4Q99MT2 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC17.59■□□□□ 0.41
Msh4Q99MT2 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Msh4Q99MT2 Gm4968-201ENSMUST00000071458 858 ntBASIC17.59■□□□□ 0.41
Msh4Q99MT2 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Msh4Q99MT2 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Msh4Q99MT2 Shroom3-211ENSMUST00000225438 5742 ntBASIC17.59■□□□□ 0.41
Msh4Q99MT2 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Msh4Q99MT2 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Msh4Q99MT2 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
Msh4Q99MT2 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Msh4Q99MT2 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC17.58■□□□□ 0.41
Msh4Q99MT2 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Msh4Q99MT2 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Msh4Q99MT2 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Msh4Q99MT2 Gm43859-201ENSMUST00000200075 1412 ntBASIC17.58■□□□□ 0.41
Msh4Q99MT2 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
Msh4Q99MT2 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Msh4Q99MT2 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Msh4Q99MT2 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC17.58■□□□□ 0.4
Msh4Q99MT2 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Msh4Q99MT2 Gm19094-201ENSMUST00000209791 1246 ntBASIC17.58■□□□□ 0.4
Msh4Q99MT2 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Msh4Q99MT2 Gm42922-201ENSMUST00000195887 2078 ntBASIC17.58■□□□□ 0.4
Msh4Q99MT2 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Msh4Q99MT2 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
Msh4Q99MT2 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Msh4Q99MT2 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
Msh4Q99MT2 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Msh4Q99MT2 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Msh4Q99MT2 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
Msh4Q99MT2 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Msh4Q99MT2 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC17.57■□□□□ 0.4
Msh4Q99MT2 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Msh4Q99MT2 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Msh4Q99MT2 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Msh4Q99MT2 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Msh4Q99MT2 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Msh4Q99MT2 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Msh4Q99MT2 Gm12441-201ENSMUST00000121806 588 ntBASIC17.57■□□□□ 0.4
Msh4Q99MT2 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Msh4Q99MT2 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC17.57■□□□□ 0.4
Msh4Q99MT2 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Msh4Q99MT2 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC17.57■□□□□ 0.4
Msh4Q99MT2 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC17.57■□□□□ 0.4
Msh4Q99MT2 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Msh4Q99MT2 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Msh4Q99MT2 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Msh4Q99MT2 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Msh4Q99MT2 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Msh4Q99MT2 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Msh4Q99MT2 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Msh4Q99MT2 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Msh4Q99MT2 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Msh4Q99MT2 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Msh4Q99MT2 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Msh4Q99MT2 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Msh4Q99MT2 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Msh4Q99MT2 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Msh4Q99MT2 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Msh4Q99MT2 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Msh4Q99MT2 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Msh4Q99MT2 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Msh4Q99MT2 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Msh4Q99MT2 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Msh4Q99MT2 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
Msh4Q99MT2 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Msh4Q99MT2 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Msh4Q99MT2 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
Msh4Q99MT2 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Msh4Q99MT2 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Msh4Q99MT2 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Msh4Q99MT2 Gm37563-201ENSMUST00000192580 1513 ntBASIC17.56■□□□□ 0.4
Msh4Q99MT2 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Msh4Q99MT2 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Msh4Q99MT2 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Msh4Q99MT2 Gm10167-201ENSMUST00000150411 1479 ntBASIC17.56■□□□□ 0.4
Msh4Q99MT2 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Msh4Q99MT2 Gm43213-201ENSMUST00000151866 1790 ntBASIC17.56■□□□□ 0.4
Msh4Q99MT2 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Msh4Q99MT2 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Msh4Q99MT2 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC17.55■□□□□ 0.4
Msh4Q99MT2 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
Msh4Q99MT2 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Msh4Q99MT2 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Msh4Q99MT2 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms