Protein–RNA interactions for Protein: Q91Y11

Pcdha9, Protocadherin alpha-9, mousemouse

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha9Q91Y11 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Pcdha9Q91Y11 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Pcdha9Q91Y11 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Pcdha9Q91Y11 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Pcdha9Q91Y11 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Pcdha9Q91Y11 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Pcdha9Q91Y11 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Pcdha9Q91Y11 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Pcdha9Q91Y11 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Pcdha9Q91Y11 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Pcdha9Q91Y11 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.67
Pcdha9Q91Y11 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Pcdha9Q91Y11 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Pcdha9Q91Y11 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Pcdha9Q91Y11 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Pcdha9Q91Y11 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Pcdha9Q91Y11 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Pcdha9Q91Y11 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Pcdha9Q91Y11 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Pcdha9Q91Y11 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Pcdha9Q91Y11 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Pcdha9Q91Y11 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Pcdha9Q91Y11 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Pcdha9Q91Y11 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC19.2■□□□□ 0.66
Pcdha9Q91Y11 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Pcdha9Q91Y11 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC19.2■□□□□ 0.66
Pcdha9Q91Y11 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Pcdha9Q91Y11 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Pcdha9Q91Y11 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Pcdha9Q91Y11 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Pcdha9Q91Y11 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Pcdha9Q91Y11 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Pcdha9Q91Y11 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Pcdha9Q91Y11 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Pcdha9Q91Y11 Gm21596-201ENSMUST00000178049 1316 ntBASIC19.2■□□□□ 0.66
Pcdha9Q91Y11 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Pcdha9Q91Y11 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC19.19■□□□□ 0.66
Pcdha9Q91Y11 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdha9Q91Y11 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdha9Q91Y11 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdha9Q91Y11 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdha9Q91Y11 Gm11249-201ENSMUST00000117071 859 ntBASIC19.19■□□□□ 0.66
Pcdha9Q91Y11 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
Pcdha9Q91Y11 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC19.19■□□□□ 0.66
Pcdha9Q91Y11 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC19.19■□□□□ 0.66
Pcdha9Q91Y11 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdha9Q91Y11 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdha9Q91Y11 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC19.19■□□□□ 0.66
Pcdha9Q91Y11 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC19.19■□□□□ 0.66
Pcdha9Q91Y11 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC19.19■□□□□ 0.66
Pcdha9Q91Y11 Fst-202ENSMUST00000223640 2612 ntBASIC19.19■□□□□ 0.66
Pcdha9Q91Y11 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdha9Q91Y11 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdha9Q91Y11 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdha9Q91Y11 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdha9Q91Y11 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdha9Q91Y11 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdha9Q91Y11 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdha9Q91Y11 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
Pcdha9Q91Y11 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdha9Q91Y11 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdha9Q91Y11 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdha9Q91Y11 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdha9Q91Y11 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdha9Q91Y11 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdha9Q91Y11 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdha9Q91Y11 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdha9Q91Y11 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
Pcdha9Q91Y11 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdha9Q91Y11 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdha9Q91Y11 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdha9Q91Y11 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC19.18■□□□□ 0.66
Pcdha9Q91Y11 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdha9Q91Y11 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdha9Q91Y11 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Pcdha9Q91Y11 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Pcdha9Q91Y11 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Pcdha9Q91Y11 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Pcdha9Q91Y11 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC19.17■□□□□ 0.66
Pcdha9Q91Y11 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Pcdha9Q91Y11 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Pcdha9Q91Y11 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Pcdha9Q91Y11 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Pcdha9Q91Y11 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Pcdha9Q91Y11 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Pcdha9Q91Y11 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Pcdha9Q91Y11 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Pcdha9Q91Y11 Gm27275-201ENSMUST00000184318 272 ntBASIC19.16■□□□□ 0.66
Pcdha9Q91Y11 Gm37856-201ENSMUST00000191634 999 ntBASIC19.16■□□□□ 0.66
Pcdha9Q91Y11 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Pcdha9Q91Y11 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC19.16■□□□□ 0.66
Pcdha9Q91Y11 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Pcdha9Q91Y11 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Pcdha9Q91Y11 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Pcdha9Q91Y11 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Pcdha9Q91Y11 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Pcdha9Q91Y11 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Pcdha9Q91Y11 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Pcdha9Q91Y11 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Pcdha9Q91Y11 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 18.2 ms