Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Lsm1Q8VC85 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lsm1Q8VC85 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Lsm1Q8VC85 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lsm1Q8VC85 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Lsm1Q8VC85 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lsm1Q8VC85 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Lsm1Q8VC85 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Lsm1Q8VC85 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lsm1Q8VC85 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Lsm1Q8VC85 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lsm1Q8VC85 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lsm1Q8VC85 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lsm1Q8VC85 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Lsm1Q8VC85 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lsm1Q8VC85 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lsm1Q8VC85 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lsm1Q8VC85 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lsm1Q8VC85 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Lsm1Q8VC85 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lsm1Q8VC85 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lsm1Q8VC85 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC17.28■□□□□ 0.36
Lsm1Q8VC85 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lsm1Q8VC85 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
Lsm1Q8VC85 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lsm1Q8VC85 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lsm1Q8VC85 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC17.28■□□□□ 0.36
Lsm1Q8VC85 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC17.28■□□□□ 0.36
Lsm1Q8VC85 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Lsm1Q8VC85 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lsm1Q8VC85 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC17.28■□□□□ 0.36
Lsm1Q8VC85 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Lsm1Q8VC85 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lsm1Q8VC85 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
Lsm1Q8VC85 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC17.27■□□□□ 0.36
Lsm1Q8VC85 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Lsm1Q8VC85 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Lsm1Q8VC85 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Lsm1Q8VC85 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Lsm1Q8VC85 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC17.27■□□□□ 0.36
Lsm1Q8VC85 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC17.27■□□□□ 0.36
Lsm1Q8VC85 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Lsm1Q8VC85 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Lsm1Q8VC85 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Lsm1Q8VC85 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Lsm1Q8VC85 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Lsm1Q8VC85 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Lsm1Q8VC85 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Lsm1Q8VC85 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Lsm1Q8VC85 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Lsm1Q8VC85 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Lsm1Q8VC85 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC17.26■□□□□ 0.35
Lsm1Q8VC85 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Lsm1Q8VC85 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Lsm1Q8VC85 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Lsm1Q8VC85 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC17.26■□□□□ 0.35
Lsm1Q8VC85 Gm18671-201ENSMUST00000214826 683 ntBASIC17.26■□□□□ 0.35
Lsm1Q8VC85 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC17.26■□□□□ 0.35
Lsm1Q8VC85 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Lsm1Q8VC85 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Lsm1Q8VC85 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC17.26■□□□□ 0.35
Lsm1Q8VC85 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC17.26■□□□□ 0.35
Lsm1Q8VC85 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Lsm1Q8VC85 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Lsm1Q8VC85 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
Lsm1Q8VC85 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Lsm1Q8VC85 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Lsm1Q8VC85 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Lsm1Q8VC85 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Lsm1Q8VC85 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC17.25■□□□□ 0.35
Lsm1Q8VC85 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC17.25■□□□□ 0.35
Lsm1Q8VC85 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Lsm1Q8VC85 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Lsm1Q8VC85 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Lsm1Q8VC85 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Lsm1Q8VC85 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC17.25■□□□□ 0.35
Lsm1Q8VC85 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Lsm1Q8VC85 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Lsm1Q8VC85 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Lsm1Q8VC85 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC17.24■□□□□ 0.35
Lsm1Q8VC85 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.35
Lsm1Q8VC85 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Lsm1Q8VC85 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Lsm1Q8VC85 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Lsm1Q8VC85 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Lsm1Q8VC85 Gm42642-201ENSMUST00000200683 355 ntBASIC17.24■□□□□ 0.35
Lsm1Q8VC85 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC17.24■□□□□ 0.35
Lsm1Q8VC85 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Lsm1Q8VC85 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Lsm1Q8VC85 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Lsm1Q8VC85 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Lsm1Q8VC85 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Lsm1Q8VC85 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Lsm1Q8VC85 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Lsm1Q8VC85 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC17.24■□□□□ 0.35
Lsm1Q8VC85 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Lsm1Q8VC85 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Lsm1Q8VC85 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Lsm1Q8VC85 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Lsm1Q8VC85 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC17.23■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms