Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC21.81■■□□□ 1.08
Brf1Q8CFK2 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
Brf1Q8CFK2 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Brf1Q8CFK2 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Brf1Q8CFK2 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Brf1Q8CFK2 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Brf1Q8CFK2 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC21.81■■□□□ 1.08
Brf1Q8CFK2 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Brf1Q8CFK2 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Brf1Q8CFK2 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC21.81■■□□□ 1.08
Brf1Q8CFK2 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Brf1Q8CFK2 CT025689.6-201ENSMUST00000224991 1104 ntBASIC21.81■■□□□ 1.08
Brf1Q8CFK2 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
Brf1Q8CFK2 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Brf1Q8CFK2 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
Brf1Q8CFK2 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Brf1Q8CFK2 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Brf1Q8CFK2 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Brf1Q8CFK2 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC21.8■■□□□ 1.08
Brf1Q8CFK2 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Brf1Q8CFK2 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC21.8■■□□□ 1.08
Brf1Q8CFK2 Gm2559-201ENSMUST00000201323 363 ntBASIC21.8■■□□□ 1.08
Brf1Q8CFK2 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Brf1Q8CFK2 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Brf1Q8CFK2 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC21.8■■□□□ 1.08
Brf1Q8CFK2 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Brf1Q8CFK2 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Brf1Q8CFK2 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC21.8■■□□□ 1.08
Brf1Q8CFK2 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Brf1Q8CFK2 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
Brf1Q8CFK2 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
Brf1Q8CFK2 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Brf1Q8CFK2 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Brf1Q8CFK2 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC21.79■■□□□ 1.08
Brf1Q8CFK2 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Brf1Q8CFK2 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Brf1Q8CFK2 Gm12896-201ENSMUST00000118430 226 ntBASIC21.79■■□□□ 1.08
Brf1Q8CFK2 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
Brf1Q8CFK2 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC21.79■■□□□ 1.08
Brf1Q8CFK2 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Brf1Q8CFK2 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Brf1Q8CFK2 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Brf1Q8CFK2 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC21.78■■□□□ 1.08
Brf1Q8CFK2 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Brf1Q8CFK2 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Brf1Q8CFK2 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Brf1Q8CFK2 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Brf1Q8CFK2 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Brf1Q8CFK2 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Brf1Q8CFK2 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC21.78■■□□□ 1.08
Brf1Q8CFK2 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC21.78■■□□□ 1.08
Brf1Q8CFK2 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Brf1Q8CFK2 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Brf1Q8CFK2 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Brf1Q8CFK2 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Brf1Q8CFK2 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC21.78■■□□□ 1.08
Brf1Q8CFK2 Flg-201ENSMUST00000050758 1488 ntBASIC21.77■■□□□ 1.08
Brf1Q8CFK2 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Brf1Q8CFK2 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Brf1Q8CFK2 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC21.77■■□□□ 1.08
Brf1Q8CFK2 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Brf1Q8CFK2 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Brf1Q8CFK2 Gm15847-201ENSMUST00000121417 1065 ntBASIC21.77■■□□□ 1.08
Brf1Q8CFK2 Zfp783-201ENSMUST00000095946 670 ntBASIC21.77■■□□□ 1.08
Brf1Q8CFK2 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Brf1Q8CFK2 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Brf1Q8CFK2 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Brf1Q8CFK2 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Brf1Q8CFK2 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Brf1Q8CFK2 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
Brf1Q8CFK2 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Brf1Q8CFK2 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Brf1Q8CFK2 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
Brf1Q8CFK2 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
Brf1Q8CFK2 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Brf1Q8CFK2 Gm38285-201ENSMUST00000192928 922 ntBASIC21.76■■□□□ 1.07
Brf1Q8CFK2 Gm20049-201ENSMUST00000219950 730 ntBASIC21.76■■□□□ 1.07
Brf1Q8CFK2 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Brf1Q8CFK2 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
Brf1Q8CFK2 Dio3-201ENSMUST00000097228 1449 ntBASIC21.76■■□□□ 1.07
Brf1Q8CFK2 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Brf1Q8CFK2 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC21.76■■□□□ 1.07
Brf1Q8CFK2 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Brf1Q8CFK2 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Brf1Q8CFK2 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Brf1Q8CFK2 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
Brf1Q8CFK2 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Brf1Q8CFK2 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Brf1Q8CFK2 Gm11927-201ENSMUST00000118472 759 ntBASIC21.75■■□□□ 1.07
Brf1Q8CFK2 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC21.75■■□□□ 1.07
Brf1Q8CFK2 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Brf1Q8CFK2 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Brf1Q8CFK2 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
Brf1Q8CFK2 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Brf1Q8CFK2 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
Brf1Q8CFK2 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Brf1Q8CFK2 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC21.74■■□□□ 1.07
Brf1Q8CFK2 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Brf1Q8CFK2 Gm42939-201ENSMUST00000197514 2205 ntBASIC21.74■■□□□ 1.07
Brf1Q8CFK2 Dmtn-207ENSMUST00000228001 2437 ntBASIC21.74■■□□□ 1.07
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms