Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Vps53Q8CCB4 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
Vps53Q8CCB4 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Vps53Q8CCB4 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Vps53Q8CCB4 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Vps53Q8CCB4 Gm22325-201ENSMUST00000158904 308 ntBASIC21.02■□□□□ 0.96
Vps53Q8CCB4 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Vps53Q8CCB4 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
Vps53Q8CCB4 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Vps53Q8CCB4 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Vps53Q8CCB4 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Vps53Q8CCB4 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Vps53Q8CCB4 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
Vps53Q8CCB4 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Vps53Q8CCB4 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
Vps53Q8CCB4 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Vps53Q8CCB4 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Vps53Q8CCB4 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
Vps53Q8CCB4 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Vps53Q8CCB4 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Vps53Q8CCB4 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Vps53Q8CCB4 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
Vps53Q8CCB4 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Vps53Q8CCB4 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Vps53Q8CCB4 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Vps53Q8CCB4 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Vps53Q8CCB4 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Vps53Q8CCB4 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
Vps53Q8CCB4 Gm13181-201ENSMUST00000120117 1069 ntBASIC21■□□□□ 0.95
Vps53Q8CCB4 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
Vps53Q8CCB4 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC21■□□□□ 0.95
Vps53Q8CCB4 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
Vps53Q8CCB4 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC21■□□□□ 0.95
Vps53Q8CCB4 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Vps53Q8CCB4 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC21■□□□□ 0.95
Vps53Q8CCB4 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC21■□□□□ 0.95
Vps53Q8CCB4 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Vps53Q8CCB4 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Vps53Q8CCB4 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Vps53Q8CCB4 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC21■□□□□ 0.95
Vps53Q8CCB4 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
Vps53Q8CCB4 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Vps53Q8CCB4 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Vps53Q8CCB4 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
Vps53Q8CCB4 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC20.99■□□□□ 0.95
Vps53Q8CCB4 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Vps53Q8CCB4 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Vps53Q8CCB4 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC20.99■□□□□ 0.95
Vps53Q8CCB4 Mir6982-201ENSMUST00000184354 68 ntBASIC20.99■□□□□ 0.95
Vps53Q8CCB4 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Vps53Q8CCB4 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
Vps53Q8CCB4 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Vps53Q8CCB4 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
Vps53Q8CCB4 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Vps53Q8CCB4 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Vps53Q8CCB4 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Vps53Q8CCB4 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Vps53Q8CCB4 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Vps53Q8CCB4 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Vps53Q8CCB4 Gm37563-201ENSMUST00000192580 1513 ntBASIC20.99■□□□□ 0.95
Vps53Q8CCB4 AC131586.2-201ENSMUST00000228370 1512 ntBASIC20.99■□□□□ 0.95
Vps53Q8CCB4 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Vps53Q8CCB4 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Vps53Q8CCB4 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Vps53Q8CCB4 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Vps53Q8CCB4 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Vps53Q8CCB4 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC20.98■□□□□ 0.95
Vps53Q8CCB4 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Vps53Q8CCB4 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
Vps53Q8CCB4 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
Vps53Q8CCB4 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
Vps53Q8CCB4 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Vps53Q8CCB4 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
Vps53Q8CCB4 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Vps53Q8CCB4 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
Vps53Q8CCB4 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Vps53Q8CCB4 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Vps53Q8CCB4 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
Vps53Q8CCB4 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Vps53Q8CCB4 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Vps53Q8CCB4 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Vps53Q8CCB4 AC158538.1-201ENSMUST00000225870 294 ntBASIC20.97■□□□□ 0.95
Vps53Q8CCB4 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
Vps53Q8CCB4 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC20.97■□□□□ 0.95
Vps53Q8CCB4 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Vps53Q8CCB4 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Vps53Q8CCB4 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Vps53Q8CCB4 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Vps53Q8CCB4 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Vps53Q8CCB4 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Vps53Q8CCB4 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Vps53Q8CCB4 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Vps53Q8CCB4 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Vps53Q8CCB4 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Vps53Q8CCB4 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Vps53Q8CCB4 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Vps53Q8CCB4 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Vps53Q8CCB4 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Vps53Q8CCB4 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Vps53Q8CCB4 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 25.1 ms