Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trub1Q8C0D0 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trub1Q8C0D0 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Trub1Q8C0D0 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trub1Q8C0D0 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trub1Q8C0D0 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Trub1Q8C0D0 Gm44549-201ENSMUST00000208351 577 ntBASIC18.64■□□□□ 0.57
Trub1Q8C0D0 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trub1Q8C0D0 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Trub1Q8C0D0 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trub1Q8C0D0 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trub1Q8C0D0 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trub1Q8C0D0 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trub1Q8C0D0 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trub1Q8C0D0 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trub1Q8C0D0 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC18.63■□□□□ 0.57
Trub1Q8C0D0 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trub1Q8C0D0 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trub1Q8C0D0 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trub1Q8C0D0 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Trub1Q8C0D0 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trub1Q8C0D0 Gm37374-201ENSMUST00000194954 1829 ntBASIC18.63■□□□□ 0.57
Trub1Q8C0D0 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Trub1Q8C0D0 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trub1Q8C0D0 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Trub1Q8C0D0 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Trub1Q8C0D0 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trub1Q8C0D0 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trub1Q8C0D0 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Trub1Q8C0D0 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC18.62■□□□□ 0.57
Trub1Q8C0D0 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC18.62■□□□□ 0.57
Trub1Q8C0D0 Rab3c-203ENSMUST00000224180 967 ntBASIC18.62■□□□□ 0.57
Trub1Q8C0D0 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trub1Q8C0D0 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trub1Q8C0D0 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trub1Q8C0D0 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trub1Q8C0D0 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trub1Q8C0D0 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Trub1Q8C0D0 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trub1Q8C0D0 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Trub1Q8C0D0 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trub1Q8C0D0 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC18.61■□□□□ 0.57
Trub1Q8C0D0 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC18.61■□□□□ 0.57
Trub1Q8C0D0 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trub1Q8C0D0 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC18.61■□□□□ 0.57
Trub1Q8C0D0 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC18.61■□□□□ 0.57
Trub1Q8C0D0 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Trub1Q8C0D0 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Trub1Q8C0D0 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trub1Q8C0D0 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Trub1Q8C0D0 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trub1Q8C0D0 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trub1Q8C0D0 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trub1Q8C0D0 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trub1Q8C0D0 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trub1Q8C0D0 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trub1Q8C0D0 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Trub1Q8C0D0 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trub1Q8C0D0 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trub1Q8C0D0 Gm2399-201ENSMUST00000104944 225 ntBASIC18.6■□□□□ 0.57
Trub1Q8C0D0 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trub1Q8C0D0 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC18.6■□□□□ 0.57
Trub1Q8C0D0 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Trub1Q8C0D0 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC18.6■□□□□ 0.57
Trub1Q8C0D0 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Trub1Q8C0D0 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Trub1Q8C0D0 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trub1Q8C0D0 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC18.59■□□□□ 0.57
Trub1Q8C0D0 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trub1Q8C0D0 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC18.59■□□□□ 0.57
Trub1Q8C0D0 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trub1Q8C0D0 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trub1Q8C0D0 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Trub1Q8C0D0 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Trub1Q8C0D0 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trub1Q8C0D0 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trub1Q8C0D0 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trub1Q8C0D0 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trub1Q8C0D0 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trub1Q8C0D0 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Trub1Q8C0D0 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trub1Q8C0D0 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trub1Q8C0D0 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
Trub1Q8C0D0 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trub1Q8C0D0 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trub1Q8C0D0 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.56
Trub1Q8C0D0 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
Trub1Q8C0D0 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC18.58■□□□□ 0.56
Trub1Q8C0D0 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Trub1Q8C0D0 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trub1Q8C0D0 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC18.58■□□□□ 0.56
Trub1Q8C0D0 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC18.58■□□□□ 0.56
Trub1Q8C0D0 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
Trub1Q8C0D0 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC18.58■□□□□ 0.56
Trub1Q8C0D0 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Trub1Q8C0D0 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trub1Q8C0D0 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trub1Q8C0D0 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trub1Q8C0D0 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trub1Q8C0D0 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 41.9 ms