Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc40Q8BI79 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc40Q8BI79 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc40Q8BI79 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc40Q8BI79 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc40Q8BI79 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc40Q8BI79 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Ccdc40Q8BI79 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC18.82■□□□□ 0.6
Ccdc40Q8BI79 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc40Q8BI79 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc40Q8BI79 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc40Q8BI79 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc40Q8BI79 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc40Q8BI79 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc40Q8BI79 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Ccdc40Q8BI79 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc40Q8BI79 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc40Q8BI79 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc40Q8BI79 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc40Q8BI79 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Ccdc40Q8BI79 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc40Q8BI79 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc40Q8BI79 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Ccdc40Q8BI79 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc40Q8BI79 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc40Q8BI79 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc40Q8BI79 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc40Q8BI79 Gm8495-201ENSMUST00000188740 694 ntBASIC18.8■□□□□ 0.6
Ccdc40Q8BI79 Gm6420-201ENSMUST00000193885 723 ntBASIC18.8■□□□□ 0.6
Ccdc40Q8BI79 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Ccdc40Q8BI79 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc40Q8BI79 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Ccdc40Q8BI79 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC18.8■□□□□ 0.6
Ccdc40Q8BI79 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc40Q8BI79 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc40Q8BI79 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc40Q8BI79 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc40Q8BI79 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC18.79■□□□□ 0.6
Ccdc40Q8BI79 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc40Q8BI79 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc40Q8BI79 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC18.79■□□□□ 0.6
Ccdc40Q8BI79 AC160393.1-201ENSMUST00000218378 1279 ntBASIC18.79■□□□□ 0.6
Ccdc40Q8BI79 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Ccdc40Q8BI79 Gm8309-201ENSMUST00000206627 1448 ntBASIC18.79■□□□□ 0.6
Ccdc40Q8BI79 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc40Q8BI79 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Ccdc40Q8BI79 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Ccdc40Q8BI79 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ccdc40Q8BI79 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Ccdc40Q8BI79 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ccdc40Q8BI79 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ccdc40Q8BI79 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ccdc40Q8BI79 Nespas-201ENSMUST00000143738 1083 ntBASIC18.78■□□□□ 0.6
Ccdc40Q8BI79 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC18.78■□□□□ 0.6
Ccdc40Q8BI79 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
Ccdc40Q8BI79 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC18.78■□□□□ 0.6
Ccdc40Q8BI79 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ccdc40Q8BI79 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ccdc40Q8BI79 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ccdc40Q8BI79 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Ccdc40Q8BI79 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Ccdc40Q8BI79 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Ccdc40Q8BI79 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ccdc40Q8BI79 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC18.77■□□□□ 0.6
Ccdc40Q8BI79 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Ccdc40Q8BI79 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ccdc40Q8BI79 Gm10849-201ENSMUST00000100397 618 ntBASIC18.77■□□□□ 0.6
Ccdc40Q8BI79 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Ccdc40Q8BI79 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ccdc40Q8BI79 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ccdc40Q8BI79 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ccdc40Q8BI79 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ccdc40Q8BI79 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Ccdc40Q8BI79 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ccdc40Q8BI79 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Ccdc40Q8BI79 Gm37805-201ENSMUST00000192612 1094 ntBASIC18.76■□□□□ 0.59
Ccdc40Q8BI79 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC18.76■□□□□ 0.59
Ccdc40Q8BI79 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Ccdc40Q8BI79 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ccdc40Q8BI79 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ccdc40Q8BI79 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ccdc40Q8BI79 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ccdc40Q8BI79 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ccdc40Q8BI79 Gm43213-201ENSMUST00000151866 1790 ntBASIC18.76■□□□□ 0.59
Ccdc40Q8BI79 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ccdc40Q8BI79 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ccdc40Q8BI79 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ccdc40Q8BI79 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
Ccdc40Q8BI79 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Ccdc40Q8BI79 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Ccdc40Q8BI79 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Ccdc40Q8BI79 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ccdc40Q8BI79 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC18.75■□□□□ 0.59
Ccdc40Q8BI79 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
Ccdc40Q8BI79 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ccdc40Q8BI79 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Ccdc40Q8BI79 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Ccdc40Q8BI79 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC18.75■□□□□ 0.59
Ccdc40Q8BI79 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ccdc40Q8BI79 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 19.5 ms