Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Hmgb4Q6P8W9 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Hmgb4Q6P8W9 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Hmgb4Q6P8W9 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Hmgb4Q6P8W9 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Hmgb4Q6P8W9 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Hmgb4Q6P8W9 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Hmgb4Q6P8W9 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Hmgb4Q6P8W9 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
Hmgb4Q6P8W9 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Hmgb4Q6P8W9 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Hmgb4Q6P8W9 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Hmgb4Q6P8W9 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Hmgb4Q6P8W9 Gm13158-201ENSMUST00000122007 736 ntBASIC18.87■□□□□ 0.61
Hmgb4Q6P8W9 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Hmgb4Q6P8W9 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Hmgb4Q6P8W9 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Hmgb4Q6P8W9 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Hmgb4Q6P8W9 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Hmgb4Q6P8W9 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Hmgb4Q6P8W9 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Hmgb4Q6P8W9 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Hmgb4Q6P8W9 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Hmgb4Q6P8W9 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Hmgb4Q6P8W9 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Hmgb4Q6P8W9 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Hmgb4Q6P8W9 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Hmgb4Q6P8W9 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Hmgb4Q6P8W9 Gm15378-201ENSMUST00000121894 207 ntBASIC18.86■□□□□ 0.61
Hmgb4Q6P8W9 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC18.86■□□□□ 0.61
Hmgb4Q6P8W9 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC18.86■□□□□ 0.61
Hmgb4Q6P8W9 AC153881.1-201ENSMUST00000214448 284 ntBASIC18.86■□□□□ 0.61
Hmgb4Q6P8W9 AC124603.1-201ENSMUST00000223843 308 ntBASIC18.86■□□□□ 0.61
Hmgb4Q6P8W9 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Hmgb4Q6P8W9 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Hmgb4Q6P8W9 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Hmgb4Q6P8W9 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Hmgb4Q6P8W9 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
Hmgb4Q6P8W9 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Hmgb4Q6P8W9 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Hmgb4Q6P8W9 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Hmgb4Q6P8W9 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Hmgb4Q6P8W9 Gm715-201ENSMUST00000117865 831 ntBASIC18.85■□□□□ 0.61
Hmgb4Q6P8W9 H2-K2-201ENSMUST00000174250 1049 ntBASIC18.85■□□□□ 0.61
Hmgb4Q6P8W9 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC18.85■□□□□ 0.61
Hmgb4Q6P8W9 AC163280.1-201ENSMUST00000228194 1100 ntBASIC18.85■□□□□ 0.61
Hmgb4Q6P8W9 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Hmgb4Q6P8W9 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Hmgb4Q6P8W9 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Hmgb4Q6P8W9 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Hmgb4Q6P8W9 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Hmgb4Q6P8W9 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Hmgb4Q6P8W9 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Hmgb4Q6P8W9 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Hmgb4Q6P8W9 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Hmgb4Q6P8W9 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Hmgb4Q6P8W9 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Hmgb4Q6P8W9 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
Hmgb4Q6P8W9 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC18.84■□□□□ 0.61
Hmgb4Q6P8W9 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC18.84■□□□□ 0.61
Hmgb4Q6P8W9 AC107452.1-201ENSMUST00000227963 481 ntBASIC18.84■□□□□ 0.61
Hmgb4Q6P8W9 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Hmgb4Q6P8W9 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Hmgb4Q6P8W9 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Hmgb4Q6P8W9 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Hmgb4Q6P8W9 Dmtn-210ENSMUST00000228824 2377 ntBASIC18.84■□□□□ 0.61
Hmgb4Q6P8W9 Dapk1-207ENSMUST00000226059 5009 ntBASIC18.84■□□□□ 0.61
Hmgb4Q6P8W9 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Hmgb4Q6P8W9 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Hmgb4Q6P8W9 Gm9885-202ENSMUST00000186234 2209 ntBASIC18.84■□□□□ 0.61
Hmgb4Q6P8W9 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC18.84■□□□□ 0.61
Hmgb4Q6P8W9 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Hmgb4Q6P8W9 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Hmgb4Q6P8W9 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Hmgb4Q6P8W9 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Hmgb4Q6P8W9 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Hmgb4Q6P8W9 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Hmgb4Q6P8W9 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Hmgb4Q6P8W9 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC18.83■□□□□ 0.6
Hmgb4Q6P8W9 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Hmgb4Q6P8W9 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.6
Hmgb4Q6P8W9 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Hmgb4Q6P8W9 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Hmgb4Q6P8W9 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Hmgb4Q6P8W9 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Hmgb4Q6P8W9 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
Hmgb4Q6P8W9 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
Hmgb4Q6P8W9 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Hmgb4Q6P8W9 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Hmgb4Q6P8W9 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Hmgb4Q6P8W9 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Hmgb4Q6P8W9 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC18.82■□□□□ 0.6
Hmgb4Q6P8W9 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Hmgb4Q6P8W9 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC18.82■□□□□ 0.6
Hmgb4Q6P8W9 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Hmgb4Q6P8W9 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Hmgb4Q6P8W9 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Hmgb4Q6P8W9 Gm22325-201ENSMUST00000158904 308 ntBASIC18.82■□□□□ 0.6
Hmgb4Q6P8W9 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Hmgb4Q6P8W9 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 23 ms