Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Sh3rf1Q69ZI1 Fcho2-208ENSMUST00000224992 2964 ntBASIC18.28■□□□□ 0.52
Sh3rf1Q69ZI1 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Sh3rf1Q69ZI1 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Sh3rf1Q69ZI1 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Sh3rf1Q69ZI1 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC18.28■□□□□ 0.52
Sh3rf1Q69ZI1 Gm12441-201ENSMUST00000121806 588 ntBASIC18.28■□□□□ 0.52
Sh3rf1Q69ZI1 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
Sh3rf1Q69ZI1 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC18.28■□□□□ 0.52
Sh3rf1Q69ZI1 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Sh3rf1Q69ZI1 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Sh3rf1Q69ZI1 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Sh3rf1Q69ZI1 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Sh3rf1Q69ZI1 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC18.28■□□□□ 0.52
Sh3rf1Q69ZI1 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Sh3rf1Q69ZI1 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Sh3rf1Q69ZI1 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Sh3rf1Q69ZI1 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Sh3rf1Q69ZI1 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Sh3rf1Q69ZI1 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Sh3rf1Q69ZI1 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Sh3rf1Q69ZI1 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Sh3rf1Q69ZI1 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Sh3rf1Q69ZI1 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Sh3rf1Q69ZI1 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC18.27■□□□□ 0.52
Sh3rf1Q69ZI1 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Sh3rf1Q69ZI1 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Sh3rf1Q69ZI1 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Sh3rf1Q69ZI1 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
Sh3rf1Q69ZI1 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC18.27■□□□□ 0.52
Sh3rf1Q69ZI1 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Sh3rf1Q69ZI1 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Sh3rf1Q69ZI1 CT010467.1-202ENSMUST00000205406 714 ntBASIC18.27■□□□□ 0.52
Sh3rf1Q69ZI1 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Sh3rf1Q69ZI1 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Sh3rf1Q69ZI1 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Sh3rf1Q69ZI1 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Sh3rf1Q69ZI1 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Sh3rf1Q69ZI1 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Sh3rf1Q69ZI1 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC18.27■□□□□ 0.51
Sh3rf1Q69ZI1 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Sh3rf1Q69ZI1 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Sh3rf1Q69ZI1 AC121598.2-201ENSMUST00000228376 2325 ntBASIC18.27■□□□□ 0.51
Sh3rf1Q69ZI1 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Sh3rf1Q69ZI1 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
Sh3rf1Q69ZI1 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC18.26■□□□□ 0.51
Sh3rf1Q69ZI1 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC18.26■□□□□ 0.51
Sh3rf1Q69ZI1 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Sh3rf1Q69ZI1 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Sh3rf1Q69ZI1 Gm45906-201ENSMUST00000208911 1430 ntBASIC18.26■□□□□ 0.51
Sh3rf1Q69ZI1 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Sh3rf1Q69ZI1 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Sh3rf1Q69ZI1 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Sh3rf1Q69ZI1 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Sh3rf1Q69ZI1 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Sh3rf1Q69ZI1 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
Sh3rf1Q69ZI1 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Sh3rf1Q69ZI1 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Sh3rf1Q69ZI1 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Sh3rf1Q69ZI1 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC18.26■□□□□ 0.51
Sh3rf1Q69ZI1 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Sh3rf1Q69ZI1 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Sh3rf1Q69ZI1 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Sh3rf1Q69ZI1 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC18.25■□□□□ 0.51
Sh3rf1Q69ZI1 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC18.25■□□□□ 0.51
Sh3rf1Q69ZI1 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Sh3rf1Q69ZI1 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Sh3rf1Q69ZI1 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Sh3rf1Q69ZI1 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Sh3rf1Q69ZI1 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Sh3rf1Q69ZI1 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Sh3rf1Q69ZI1 Gm13146-201ENSMUST00000118508 780 ntBASIC18.25■□□□□ 0.51
Sh3rf1Q69ZI1 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Sh3rf1Q69ZI1 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Sh3rf1Q69ZI1 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Sh3rf1Q69ZI1 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Sh3rf1Q69ZI1 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Sh3rf1Q69ZI1 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Sh3rf1Q69ZI1 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Sh3rf1Q69ZI1 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Sh3rf1Q69ZI1 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Sh3rf1Q69ZI1 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Sh3rf1Q69ZI1 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Sh3rf1Q69ZI1 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Sh3rf1Q69ZI1 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
Sh3rf1Q69ZI1 Gm10653-202ENSMUST00000139570 835 ntBASIC18.24■□□□□ 0.51
Sh3rf1Q69ZI1 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC18.24■□□□□ 0.51
Sh3rf1Q69ZI1 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC18.24■□□□□ 0.51
Sh3rf1Q69ZI1 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC18.24■□□□□ 0.51
Sh3rf1Q69ZI1 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Sh3rf1Q69ZI1 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Sh3rf1Q69ZI1 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Sh3rf1Q69ZI1 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Sh3rf1Q69ZI1 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Sh3rf1Q69ZI1 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Sh3rf1Q69ZI1 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Sh3rf1Q69ZI1 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Sh3rf1Q69ZI1 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Sh3rf1Q69ZI1 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
Sh3rf1Q69ZI1 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 49.1 ms