Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
ShhQ62226 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
ShhQ62226 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ShhQ62226 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ShhQ62226 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC16.81■□□□□ 0.28
ShhQ62226 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
ShhQ62226 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC16.81■□□□□ 0.28
ShhQ62226 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ShhQ62226 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC16.81■□□□□ 0.28
ShhQ62226 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
ShhQ62226 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC16.81■□□□□ 0.28
ShhQ62226 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ShhQ62226 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ShhQ62226 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ShhQ62226 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
ShhQ62226 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC16.81■□□□□ 0.28
ShhQ62226 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC16.81■□□□□ 0.28
ShhQ62226 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
ShhQ62226 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ShhQ62226 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ShhQ62226 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ShhQ62226 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ShhQ62226 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ShhQ62226 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ShhQ62226 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
ShhQ62226 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
ShhQ62226 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ShhQ62226 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
ShhQ62226 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
ShhQ62226 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
ShhQ62226 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ShhQ62226 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ShhQ62226 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC16.8■□□□□ 0.28
ShhQ62226 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ShhQ62226 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
ShhQ62226 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ShhQ62226 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ShhQ62226 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC16.79■□□□□ 0.28
ShhQ62226 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC16.79■□□□□ 0.28
ShhQ62226 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC16.79■□□□□ 0.28
ShhQ62226 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
ShhQ62226 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC16.79■□□□□ 0.28
ShhQ62226 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
ShhQ62226 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ShhQ62226 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
ShhQ62226 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC16.79■□□□□ 0.28
ShhQ62226 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ShhQ62226 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ShhQ62226 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
ShhQ62226 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ShhQ62226 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
ShhQ62226 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC16.79■□□□□ 0.28
ShhQ62226 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ShhQ62226 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
ShhQ62226 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ShhQ62226 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ShhQ62226 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ShhQ62226 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ShhQ62226 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ShhQ62226 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC16.78■□□□□ 0.28
ShhQ62226 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
ShhQ62226 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC16.78■□□□□ 0.28
ShhQ62226 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ShhQ62226 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ShhQ62226 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
ShhQ62226 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
ShhQ62226 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ShhQ62226 Gm18666-201ENSMUST00000190039 958 ntBASIC16.78■□□□□ 0.28
ShhQ62226 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ShhQ62226 AC153881.1-201ENSMUST00000214448 284 ntBASIC16.78■□□□□ 0.28
ShhQ62226 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ShhQ62226 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
ShhQ62226 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ShhQ62226 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ShhQ62226 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ShhQ62226 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
ShhQ62226 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
ShhQ62226 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ShhQ62226 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ShhQ62226 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ShhQ62226 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ShhQ62226 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC16.77■□□□□ 0.28
ShhQ62226 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
ShhQ62226 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
ShhQ62226 Gm13509-201ENSMUST00000119733 1308 ntBASIC16.77■□□□□ 0.28
ShhQ62226 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
ShhQ62226 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ShhQ62226 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ShhQ62226 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
ShhQ62226 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
ShhQ62226 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC16.77■□□□□ 0.28
ShhQ62226 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ShhQ62226 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ShhQ62226 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ShhQ62226 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
ShhQ62226 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.27
ShhQ62226 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
ShhQ62226 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ShhQ62226 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ShhQ62226 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 24.3 ms