Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Gm38345-201ENSMUST00000192635 1748 ntBASIC20.42■□□□□ 0.86
Col11a1Q61245 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col11a1Q61245 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC20.42■□□□□ 0.86
Col11a1Q61245 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col11a1Q61245 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col11a1Q61245 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
Col11a1Q61245 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Col11a1Q61245 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
Col11a1Q61245 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col11a1Q61245 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col11a1Q61245 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Col11a1Q61245 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col11a1Q61245 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC20.41■□□□□ 0.86
Col11a1Q61245 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
Col11a1Q61245 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col11a1Q61245 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Col11a1Q61245 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col11a1Q61245 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col11a1Q61245 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
Col11a1Q61245 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC20.4■□□□□ 0.86
Col11a1Q61245 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC20.4■□□□□ 0.86
Col11a1Q61245 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col11a1Q61245 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col11a1Q61245 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
Col11a1Q61245 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC20.4■□□□□ 0.86
Col11a1Q61245 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC20.4■□□□□ 0.86
Col11a1Q61245 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC20.4■□□□□ 0.86
Col11a1Q61245 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col11a1Q61245 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col11a1Q61245 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col11a1Q61245 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col11a1Q61245 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col11a1Q61245 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.86
Col11a1Q61245 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Col11a1Q61245 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Col11a1Q61245 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Col11a1Q61245 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Col11a1Q61245 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Col11a1Q61245 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Col11a1Q61245 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Col11a1Q61245 Gm37820-201ENSMUST00000194021 2147 ntBASIC20.39■□□□□ 0.85
Col11a1Q61245 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Col11a1Q61245 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col11a1Q61245 Gm6277-202ENSMUST00000224036 2779 ntBASIC20.39■□□□□ 0.85
Col11a1Q61245 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
Col11a1Q61245 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col11a1Q61245 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Col11a1Q61245 Spsb2-203ENSMUST00000112473 1322 ntBASIC20.38■□□□□ 0.85
Col11a1Q61245 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col11a1Q61245 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col11a1Q61245 Gm13474-201ENSMUST00000122466 815 ntBASIC20.38■□□□□ 0.85
Col11a1Q61245 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col11a1Q61245 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col11a1Q61245 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col11a1Q61245 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
Col11a1Q61245 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Col11a1Q61245 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC20.37■□□□□ 0.85
Col11a1Q61245 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
Col11a1Q61245 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC20.37■□□□□ 0.85
Col11a1Q61245 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Col11a1Q61245 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
Col11a1Q61245 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col11a1Q61245 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC20.37■□□□□ 0.85
Col11a1Q61245 Gm7638-201ENSMUST00000121348 967 ntBASIC20.37■□□□□ 0.85
Col11a1Q61245 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
Col11a1Q61245 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC20.37■□□□□ 0.85
Col11a1Q61245 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
Col11a1Q61245 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col11a1Q61245 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Col11a1Q61245 Gm9694-201ENSMUST00000193347 1189 ntBASIC20.36■□□□□ 0.85
Col11a1Q61245 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC20.36■□□□□ 0.85
Col11a1Q61245 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC20.36■□□□□ 0.85
Col11a1Q61245 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
Col11a1Q61245 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col11a1Q61245 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col11a1Q61245 Gm27357-201ENSMUST00000183754 135 ntBASIC20.35■□□□□ 0.85
Col11a1Q61245 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Col11a1Q61245 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col11a1Q61245 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col11a1Q61245 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Col11a1Q61245 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col11a1Q61245 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
Col11a1Q61245 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col11a1Q61245 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col11a1Q61245 Gm27389-201ENSMUST00000183622 195 ntBASIC20.34■□□□□ 0.85
Col11a1Q61245 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC20.34■□□□□ 0.85
Col11a1Q61245 AC164629.2-201ENSMUST00000217916 270 ntBASIC20.34■□□□□ 0.85
Col11a1Q61245 Gm21559-201ENSMUST00000220638 855 ntBASIC20.34■□□□□ 0.85
Col11a1Q61245 Gm8587-201ENSMUST00000076538 843 ntBASIC20.34■□□□□ 0.85
Col11a1Q61245 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col11a1Q61245 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col11a1Q61245 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col11a1Q61245 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col11a1Q61245 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC20.34■□□□□ 0.85
Col11a1Q61245 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col11a1Q61245 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col11a1Q61245 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col11a1Q61245 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col11a1Q61245 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
Col11a1Q61245 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC20.33■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 16 ms