Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CtcfQ61164 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
CtcfQ61164 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CtcfQ61164 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC19.85■□□□□ 0.77
CtcfQ61164 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
CtcfQ61164 AC122335.2-201ENSMUST00000213901 6181 ntBASIC19.85■□□□□ 0.77
CtcfQ61164 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CtcfQ61164 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CtcfQ61164 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CtcfQ61164 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC19.85■□□□□ 0.77
CtcfQ61164 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CtcfQ61164 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CtcfQ61164 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC19.85■□□□□ 0.77
CtcfQ61164 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CtcfQ61164 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CtcfQ61164 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
CtcfQ61164 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CtcfQ61164 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CtcfQ61164 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
CtcfQ61164 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CtcfQ61164 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
CtcfQ61164 AC107452.1-201ENSMUST00000227963 481 ntBASIC19.84■□□□□ 0.77
CtcfQ61164 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CtcfQ61164 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC19.84■□□□□ 0.77
CtcfQ61164 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CtcfQ61164 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
CtcfQ61164 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
CtcfQ61164 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC19.83■□□□□ 0.77
CtcfQ61164 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CtcfQ61164 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CtcfQ61164 Gm13234-201ENSMUST00000120010 747 ntBASIC19.83■□□□□ 0.77
CtcfQ61164 Nespas-201ENSMUST00000143738 1083 ntBASIC19.83■□□□□ 0.77
CtcfQ61164 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC19.83■□□□□ 0.77
CtcfQ61164 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CtcfQ61164 AC121961.1-201ENSMUST00000218594 1779 ntBASIC19.83■□□□□ 0.76
CtcfQ61164 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
CtcfQ61164 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CtcfQ61164 Gm10129-202ENSMUST00000193100 1316 ntBASIC19.82■□□□□ 0.76
CtcfQ61164 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CtcfQ61164 Gm13534-201ENSMUST00000121169 513 ntBASIC19.82■□□□□ 0.76
CtcfQ61164 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC19.82■□□□□ 0.76
CtcfQ61164 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC19.82■□□□□ 0.76
CtcfQ61164 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC19.82■□□□□ 0.76
CtcfQ61164 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CtcfQ61164 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
CtcfQ61164 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CtcfQ61164 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
CtcfQ61164 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CtcfQ61164 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CtcfQ61164 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CtcfQ61164 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
CtcfQ61164 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CtcfQ61164 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
CtcfQ61164 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CtcfQ61164 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CtcfQ61164 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CtcfQ61164 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CtcfQ61164 Fcho2-208ENSMUST00000224992 2964 ntBASIC19.81■□□□□ 0.76
CtcfQ61164 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CtcfQ61164 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CtcfQ61164 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CtcfQ61164 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CtcfQ61164 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
CtcfQ61164 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC19.81■□□□□ 0.76
CtcfQ61164 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CtcfQ61164 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CtcfQ61164 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CtcfQ61164 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC19.81■□□□□ 0.76
CtcfQ61164 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
CtcfQ61164 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CtcfQ61164 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CtcfQ61164 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CtcfQ61164 Gm42900-201ENSMUST00000197184 2167 ntBASIC19.8■□□□□ 0.76
CtcfQ61164 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CtcfQ61164 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC19.8■□□□□ 0.76
CtcfQ61164 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CtcfQ61164 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
CtcfQ61164 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CtcfQ61164 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CtcfQ61164 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CtcfQ61164 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CtcfQ61164 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC19.8■□□□□ 0.76
CtcfQ61164 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CtcfQ61164 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CtcfQ61164 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CtcfQ61164 Gm6420-201ENSMUST00000193885 723 ntBASIC19.8■□□□□ 0.76
CtcfQ61164 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CtcfQ61164 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CtcfQ61164 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
CtcfQ61164 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CtcfQ61164 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CtcfQ61164 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CtcfQ61164 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CtcfQ61164 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CtcfQ61164 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
CtcfQ61164 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CtcfQ61164 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CtcfQ61164 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
CtcfQ61164 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
CtcfQ61164 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 22.7 ms