Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Nr1h4Q60641 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC17.23■□□□□ 0.35
Nr1h4Q60641 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nr1h4Q60641 AC107452.1-201ENSMUST00000227963 481 ntBASIC17.23■□□□□ 0.35
Nr1h4Q60641 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nr1h4Q60641 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nr1h4Q60641 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nr1h4Q60641 Gm10167-201ENSMUST00000150411 1479 ntBASIC17.23■□□□□ 0.35
Nr1h4Q60641 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nr1h4Q60641 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nr1h4Q60641 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nr1h4Q60641 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nr1h4Q60641 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Nr1h4Q60641 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nr1h4Q60641 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Nr1h4Q60641 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Nr1h4Q60641 Gm27454-201ENSMUST00000185090 204 ntBASIC17.22■□□□□ 0.35
Nr1h4Q60641 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nr1h4Q60641 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC17.22■□□□□ 0.35
Nr1h4Q60641 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Nr1h4Q60641 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Nr1h4Q60641 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nr1h4Q60641 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nr1h4Q60641 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Nr1h4Q60641 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nr1h4Q60641 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nr1h4Q60641 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nr1h4Q60641 Gm8309-201ENSMUST00000206627 1448 ntBASIC17.21■□□□□ 0.35
Nr1h4Q60641 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nr1h4Q60641 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nr1h4Q60641 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nr1h4Q60641 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
Nr1h4Q60641 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC17.21■□□□□ 0.35
Nr1h4Q60641 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC17.21■□□□□ 0.35
Nr1h4Q60641 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nr1h4Q60641 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Nr1h4Q60641 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Nr1h4Q60641 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nr1h4Q60641 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nr1h4Q60641 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nr1h4Q60641 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
Nr1h4Q60641 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.34
Nr1h4Q60641 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC17.21■□□□□ 0.34
Nr1h4Q60641 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.34
Nr1h4Q60641 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Nr1h4Q60641 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Nr1h4Q60641 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Nr1h4Q60641 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Nr1h4Q60641 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Nr1h4Q60641 Gm26971-201ENSMUST00000182423 1072 ntBASIC17.2■□□□□ 0.34
Nr1h4Q60641 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC17.2■□□□□ 0.34
Nr1h4Q60641 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Nr1h4Q60641 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Nr1h4Q60641 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Nr1h4Q60641 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Nr1h4Q60641 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
Nr1h4Q60641 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC17.19■□□□□ 0.34
Nr1h4Q60641 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Nr1h4Q60641 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Nr1h4Q60641 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Nr1h4Q60641 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
Nr1h4Q60641 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Nr1h4Q60641 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Nr1h4Q60641 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Nr1h4Q60641 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Nr1h4Q60641 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Nr1h4Q60641 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Nr1h4Q60641 Gm5421-201ENSMUST00000181698 2354 ntBASIC17.18■□□□□ 0.34
Nr1h4Q60641 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Nr1h4Q60641 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Nr1h4Q60641 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Nr1h4Q60641 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC17.18■□□□□ 0.34
Nr1h4Q60641 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC17.18■□□□□ 0.34
Nr1h4Q60641 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Nr1h4Q60641 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Nr1h4Q60641 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Nr1h4Q60641 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Nr1h4Q60641 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC17.18■□□□□ 0.34
Nr1h4Q60641 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Nr1h4Q60641 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Nr1h4Q60641 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
Nr1h4Q60641 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Nr1h4Q60641 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Nr1h4Q60641 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Nr1h4Q60641 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
Nr1h4Q60641 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Nr1h4Q60641 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Nr1h4Q60641 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Nr1h4Q60641 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Nr1h4Q60641 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Nr1h4Q60641 Gm6598-201ENSMUST00000202719 2615 ntBASIC17.17■□□□□ 0.34
Nr1h4Q60641 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Nr1h4Q60641 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Nr1h4Q60641 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Nr1h4Q60641 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Nr1h4Q60641 Cdc34b-202ENSMUST00000188741 1252 ntBASIC17.17■□□□□ 0.34
Nr1h4Q60641 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Nr1h4Q60641 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Nr1h4Q60641 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Nr1h4Q60641 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 26.5 ms