Protein–RNA interactions for Protein: Q5NCC3

Trim41, E3 ubiquitin-protein ligase TRIM41, mousemouse

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim41Q5NCC3 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
Trim41Q5NCC3 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC31.42■■■□□ 2.62
Trim41Q5NCC3 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
Trim41Q5NCC3 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
Trim41Q5NCC3 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC31.42■■■□□ 2.62
Trim41Q5NCC3 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC31.42■■■□□ 2.62
Trim41Q5NCC3 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC31.42■■■□□ 2.62
Trim41Q5NCC3 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC31.41■■■□□ 2.62
Trim41Q5NCC3 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC31.41■■■□□ 2.62
Trim41Q5NCC3 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC31.41■■■□□ 2.62
Trim41Q5NCC3 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
Trim41Q5NCC3 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC31.41■■■□□ 2.62
Trim41Q5NCC3 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC31.41■■■□□ 2.62
Trim41Q5NCC3 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
Trim41Q5NCC3 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC31.41■■■□□ 2.62
Trim41Q5NCC3 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC31.4■■■□□ 2.62
Trim41Q5NCC3 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
Trim41Q5NCC3 Arhgef4-208ENSMUST00000211073 171 ntBASIC31.4■■■□□ 2.62
Trim41Q5NCC3 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC31.4■■■□□ 2.62
Trim41Q5NCC3 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
Trim41Q5NCC3 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
Trim41Q5NCC3 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC31.4■■■□□ 2.62
Trim41Q5NCC3 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC31.4■■■□□ 2.62
Trim41Q5NCC3 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
Trim41Q5NCC3 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC31.39■■■□□ 2.62
Trim41Q5NCC3 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
Trim41Q5NCC3 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
Trim41Q5NCC3 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
Trim41Q5NCC3 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC31.39■■■□□ 2.62
Trim41Q5NCC3 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
Trim41Q5NCC3 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
Trim41Q5NCC3 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
Trim41Q5NCC3 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
Trim41Q5NCC3 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC31.38■■■□□ 2.61
Trim41Q5NCC3 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC31.38■■■□□ 2.61
Trim41Q5NCC3 AC166341.7-201ENSMUST00000221698 126 ntBASIC31.38■■■□□ 2.61
Trim41Q5NCC3 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC31.38■■■□□ 2.61
Trim41Q5NCC3 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC31.38■■■□□ 2.61
Trim41Q5NCC3 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
Trim41Q5NCC3 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
Trim41Q5NCC3 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
Trim41Q5NCC3 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
Trim41Q5NCC3 Gm6443-201ENSMUST00000203599 874 ntBASIC31.37■■■□□ 2.61
Trim41Q5NCC3 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
Trim41Q5NCC3 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
Trim41Q5NCC3 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC31.37■■■□□ 2.61
Trim41Q5NCC3 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
Trim41Q5NCC3 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC31.36■■■□□ 2.61
Trim41Q5NCC3 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
Trim41Q5NCC3 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
Trim41Q5NCC3 Rncr4-201ENSMUST00000194541 2234 ntBASIC31.36■■■□□ 2.61
Trim41Q5NCC3 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC31.36■■■□□ 2.61
Trim41Q5NCC3 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC31.36■■■□□ 2.61
Trim41Q5NCC3 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
Trim41Q5NCC3 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC31.36■■■□□ 2.61
Trim41Q5NCC3 Gm7712-202ENSMUST00000222331 1510 ntBASIC31.35■■■□□ 2.61
Trim41Q5NCC3 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC31.35■■■□□ 2.61
Trim41Q5NCC3 Odf3b-204ENSMUST00000227834 930 ntBASIC31.35■■■□□ 2.61
Trim41Q5NCC3 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
Trim41Q5NCC3 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC31.35■■■□□ 2.61
Trim41Q5NCC3 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
Trim41Q5NCC3 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC31.35■■■□□ 2.61
Trim41Q5NCC3 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
Trim41Q5NCC3 Gm10654-201ENSMUST00000098653 1633 ntBASIC31.35■■■□□ 2.61
Trim41Q5NCC3 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
Trim41Q5NCC3 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
Trim41Q5NCC3 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
Trim41Q5NCC3 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
Trim41Q5NCC3 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC31.34■■■□□ 2.61
Trim41Q5NCC3 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
Trim41Q5NCC3 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC31.33■■■□□ 2.61
Trim41Q5NCC3 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
Trim41Q5NCC3 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
Trim41Q5NCC3 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
Trim41Q5NCC3 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
Trim41Q5NCC3 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC31.33■■■□□ 2.61
Trim41Q5NCC3 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC31.33■■■□□ 2.61
Trim41Q5NCC3 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC31.33■■■□□ 2.61
Trim41Q5NCC3 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC31.33■■■□□ 2.61
Trim41Q5NCC3 AC156016.1-201ENSMUST00000227190 1035 ntBASIC31.33■■■□□ 2.61
Trim41Q5NCC3 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
Trim41Q5NCC3 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
Trim41Q5NCC3 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
Trim41Q5NCC3 Gm7856-201ENSMUST00000117514 1493 ntBASIC31.33■■■□□ 2.61
Trim41Q5NCC3 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
Trim41Q5NCC3 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC31.32■■■□□ 2.6
Trim41Q5NCC3 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
Trim41Q5NCC3 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
Trim41Q5NCC3 Gm12382-201ENSMUST00000122005 922 ntBASIC31.32■■■□□ 2.6
Trim41Q5NCC3 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
Trim41Q5NCC3 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
Trim41Q5NCC3 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC31.32■■■□□ 2.6
Trim41Q5NCC3 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC31.32■■■□□ 2.6
Trim41Q5NCC3 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Trim41Q5NCC3 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Trim41Q5NCC3 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Trim41Q5NCC3 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC31.31■■■□□ 2.6
Trim41Q5NCC3 Gm7284-201ENSMUST00000131667 944 ntBASIC31.31■■■□□ 2.6
Trim41Q5NCC3 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
Trim41Q5NCC3 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC31.31■■■□□ 2.6
Retrieved 100 of 76,532 protein–RNA pairs in 57.3 ms