Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Upf3bQ3ULL6 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC19.32■□□□□ 0.68
Upf3bQ3ULL6 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Upf3bQ3ULL6 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Upf3bQ3ULL6 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Upf3bQ3ULL6 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Upf3bQ3ULL6 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Upf3bQ3ULL6 Gm35558-201ENSMUST00000222675 2219 ntBASIC19.32■□□□□ 0.68
Upf3bQ3ULL6 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Upf3bQ3ULL6 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Upf3bQ3ULL6 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Upf3bQ3ULL6 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Upf3bQ3ULL6 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Upf3bQ3ULL6 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Upf3bQ3ULL6 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC19.31■□□□□ 0.68
Upf3bQ3ULL6 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Upf3bQ3ULL6 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC19.31■□□□□ 0.68
Upf3bQ3ULL6 Gm2559-201ENSMUST00000201323 363 ntBASIC19.31■□□□□ 0.68
Upf3bQ3ULL6 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Upf3bQ3ULL6 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Upf3bQ3ULL6 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Upf3bQ3ULL6 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Upf3bQ3ULL6 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC19.31■□□□□ 0.68
Upf3bQ3ULL6 Gm38345-201ENSMUST00000192635 1748 ntBASIC19.31■□□□□ 0.68
Upf3bQ3ULL6 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Upf3bQ3ULL6 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Upf3bQ3ULL6 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Upf3bQ3ULL6 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Upf3bQ3ULL6 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Upf3bQ3ULL6 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC19.3■□□□□ 0.68
Upf3bQ3ULL6 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Upf3bQ3ULL6 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC19.3■□□□□ 0.68
Upf3bQ3ULL6 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Upf3bQ3ULL6 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Upf3bQ3ULL6 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Upf3bQ3ULL6 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Upf3bQ3ULL6 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Upf3bQ3ULL6 Flg-201ENSMUST00000050758 1488 ntBASIC19.29■□□□□ 0.68
Upf3bQ3ULL6 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Upf3bQ3ULL6 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC19.29■□□□□ 0.68
Upf3bQ3ULL6 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Upf3bQ3ULL6 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Upf3bQ3ULL6 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC19.29■□□□□ 0.68
Upf3bQ3ULL6 Wnt10b-205ENSMUST00000226846 1204 ntBASIC19.29■□□□□ 0.68
Upf3bQ3ULL6 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Upf3bQ3ULL6 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Upf3bQ3ULL6 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Upf3bQ3ULL6 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Upf3bQ3ULL6 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Upf3bQ3ULL6 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Upf3bQ3ULL6 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Upf3bQ3ULL6 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Upf3bQ3ULL6 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC19.28■□□□□ 0.68
Upf3bQ3ULL6 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Upf3bQ3ULL6 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Upf3bQ3ULL6 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Upf3bQ3ULL6 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Upf3bQ3ULL6 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Upf3bQ3ULL6 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Upf3bQ3ULL6 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Upf3bQ3ULL6 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Upf3bQ3ULL6 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Upf3bQ3ULL6 Gm15847-201ENSMUST00000121417 1065 ntBASIC19.28■□□□□ 0.68
Upf3bQ3ULL6 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC19.28■□□□□ 0.68
Upf3bQ3ULL6 Gm20049-201ENSMUST00000219950 730 ntBASIC19.28■□□□□ 0.68
Upf3bQ3ULL6 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Upf3bQ3ULL6 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Upf3bQ3ULL6 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Upf3bQ3ULL6 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Upf3bQ3ULL6 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Upf3bQ3ULL6 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Upf3bQ3ULL6 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Upf3bQ3ULL6 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Upf3bQ3ULL6 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Upf3bQ3ULL6 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Upf3bQ3ULL6 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Upf3bQ3ULL6 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Upf3bQ3ULL6 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Upf3bQ3ULL6 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Upf3bQ3ULL6 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC19.27■□□□□ 0.68
Upf3bQ3ULL6 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Upf3bQ3ULL6 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC19.27■□□□□ 0.68
Upf3bQ3ULL6 Gm12896-201ENSMUST00000118430 226 ntBASIC19.27■□□□□ 0.68
Upf3bQ3ULL6 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC19.27■□□□□ 0.68
Upf3bQ3ULL6 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Upf3bQ3ULL6 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC19.27■□□□□ 0.68
Upf3bQ3ULL6 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Upf3bQ3ULL6 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Upf3bQ3ULL6 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Upf3bQ3ULL6 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC19.27■□□□□ 0.67
Upf3bQ3ULL6 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC19.27■□□□□ 0.67
Upf3bQ3ULL6 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
Upf3bQ3ULL6 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC19.27■□□□□ 0.67
Upf3bQ3ULL6 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Upf3bQ3ULL6 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC19.27■□□□□ 0.67
Upf3bQ3ULL6 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Upf3bQ3ULL6 Grk6-206ENSMUST00000224995 2971 ntBASIC19.26■□□□□ 0.67
Upf3bQ3ULL6 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Upf3bQ3ULL6 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
Upf3bQ3ULL6 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 36.5 ms