Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col28a1Q2UY11 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
Col28a1Q2UY11 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col28a1Q2UY11 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col28a1Q2UY11 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col28a1Q2UY11 Gm42778-201ENSMUST00000199644 553 ntBASIC17.53■□□□□ 0.4
Col28a1Q2UY11 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col28a1Q2UY11 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col28a1Q2UY11 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC17.53■□□□□ 0.4
Col28a1Q2UY11 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col28a1Q2UY11 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Col28a1Q2UY11 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col28a1Q2UY11 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col28a1Q2UY11 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col28a1Q2UY11 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col28a1Q2UY11 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col28a1Q2UY11 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
Col28a1Q2UY11 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Col28a1Q2UY11 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col28a1Q2UY11 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Col28a1Q2UY11 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Col28a1Q2UY11 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Col28a1Q2UY11 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Col28a1Q2UY11 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Col28a1Q2UY11 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.39
Col28a1Q2UY11 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col28a1Q2UY11 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col28a1Q2UY11 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col28a1Q2UY11 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col28a1Q2UY11 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Col28a1Q2UY11 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Col28a1Q2UY11 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Col28a1Q2UY11 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
Col28a1Q2UY11 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC17.51■□□□□ 0.39
Col28a1Q2UY11 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col28a1Q2UY11 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Col28a1Q2UY11 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col28a1Q2UY11 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col28a1Q2UY11 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col28a1Q2UY11 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col28a1Q2UY11 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Col28a1Q2UY11 Gm38308-201ENSMUST00000194934 1809 ntBASIC17.5■□□□□ 0.39
Col28a1Q2UY11 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Col28a1Q2UY11 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC17.5■□□□□ 0.39
Col28a1Q2UY11 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC17.5■□□□□ 0.39
Col28a1Q2UY11 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC17.5■□□□□ 0.39
Col28a1Q2UY11 Gm8969-201ENSMUST00000199694 526 ntBASIC17.5■□□□□ 0.39
Col28a1Q2UY11 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC17.5■□□□□ 0.39
Col28a1Q2UY11 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col28a1Q2UY11 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col28a1Q2UY11 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col28a1Q2UY11 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col28a1Q2UY11 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col28a1Q2UY11 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col28a1Q2UY11 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col28a1Q2UY11 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Col28a1Q2UY11 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col28a1Q2UY11 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
Col28a1Q2UY11 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col28a1Q2UY11 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col28a1Q2UY11 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Col28a1Q2UY11 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC17.49■□□□□ 0.39
Col28a1Q2UY11 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col28a1Q2UY11 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Col28a1Q2UY11 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Col28a1Q2UY11 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Col28a1Q2UY11 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col28a1Q2UY11 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col28a1Q2UY11 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Col28a1Q2UY11 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col28a1Q2UY11 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col28a1Q2UY11 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
Col28a1Q2UY11 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col28a1Q2UY11 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col28a1Q2UY11 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
Col28a1Q2UY11 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC17.48■□□□□ 0.39
Col28a1Q2UY11 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Col28a1Q2UY11 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col28a1Q2UY11 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col28a1Q2UY11 Gm11421-201ENSMUST00000122124 294 ntBASIC17.48■□□□□ 0.39
Col28a1Q2UY11 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Col28a1Q2UY11 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Col28a1Q2UY11 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC17.48■□□□□ 0.39
Col28a1Q2UY11 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col28a1Q2UY11 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col28a1Q2UY11 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col28a1Q2UY11 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col28a1Q2UY11 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col28a1Q2UY11 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Col28a1Q2UY11 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col28a1Q2UY11 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col28a1Q2UY11 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col28a1Q2UY11 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col28a1Q2UY11 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Col28a1Q2UY11 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col28a1Q2UY11 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Col28a1Q2UY11 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
Col28a1Q2UY11 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Col28a1Q2UY11 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC17.47■□□□□ 0.39
Col28a1Q2UY11 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms