Protein–RNA interactions for Protein: P97313

Prkdc, DNA-dependent protein kinase catalytic subunit, mousemouse

Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PrkdcP97313 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
PrkdcP97313 Gm5540-201ENSMUST00000131852 1848 ntBASIC12.49□□□□□ -0.41
PrkdcP97313 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
PrkdcP97313 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC12.49□□□□□ -0.41
PrkdcP97313 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
PrkdcP97313 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
PrkdcP97313 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
PrkdcP97313 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
PrkdcP97313 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
PrkdcP97313 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC12.49□□□□□ -0.41
PrkdcP97313 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
PrkdcP97313 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
PrkdcP97313 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
PrkdcP97313 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC12.49□□□□□ -0.41
PrkdcP97313 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
PrkdcP97313 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
PrkdcP97313 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
PrkdcP97313 Gm7638-201ENSMUST00000121348 967 ntBASIC12.48□□□□□ -0.41
PrkdcP97313 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
PrkdcP97313 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
PrkdcP97313 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
PrkdcP97313 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
PrkdcP97313 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
PrkdcP97313 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
PrkdcP97313 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
PrkdcP97313 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC12.48□□□□□ -0.41
PrkdcP97313 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
PrkdcP97313 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
PrkdcP97313 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
PrkdcP97313 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
PrkdcP97313 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC12.48□□□□□ -0.41
PrkdcP97313 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
PrkdcP97313 Gm44544-201ENSMUST00000207052 1844 ntBASIC12.48□□□□□ -0.41
PrkdcP97313 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
PrkdcP97313 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
PrkdcP97313 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
PrkdcP97313 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
PrkdcP97313 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
PrkdcP97313 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
PrkdcP97313 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
PrkdcP97313 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
PrkdcP97313 Gm11594-201ENSMUST00000122313 162 ntBASIC12.47□□□□□ -0.41
PrkdcP97313 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
PrkdcP97313 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
PrkdcP97313 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
PrkdcP97313 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
PrkdcP97313 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
PrkdcP97313 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
PrkdcP97313 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
PrkdcP97313 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
PrkdcP97313 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC12.47□□□□□ -0.41
PrkdcP97313 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC12.47□□□□□ -0.41
PrkdcP97313 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
PrkdcP97313 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
PrkdcP97313 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
PrkdcP97313 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
PrkdcP97313 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC12.46□□□□□ -0.41
PrkdcP97313 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
PrkdcP97313 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
PrkdcP97313 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC12.46□□□□□ -0.41
PrkdcP97313 Olfr129-201ENSMUST00000122318 993 ntBASIC12.46□□□□□ -0.41
PrkdcP97313 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
PrkdcP97313 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
PrkdcP97313 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
PrkdcP97313 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
PrkdcP97313 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC12.46□□□□□ -0.42
PrkdcP97313 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
PrkdcP97313 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
PrkdcP97313 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
PrkdcP97313 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
PrkdcP97313 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
PrkdcP97313 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC12.45□□□□□ -0.42
PrkdcP97313 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
PrkdcP97313 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
PrkdcP97313 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
PrkdcP97313 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
PrkdcP97313 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
PrkdcP97313 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
PrkdcP97313 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
PrkdcP97313 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
PrkdcP97313 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC12.45□□□□□ -0.42
PrkdcP97313 Auts2-212ENSMUST00000178555 309 ntBASIC12.45□□□□□ -0.42
PrkdcP97313 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
PrkdcP97313 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
PrkdcP97313 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC12.45□□□□□ -0.42
PrkdcP97313 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
PrkdcP97313 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC12.45□□□□□ -0.42
PrkdcP97313 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
PrkdcP97313 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
PrkdcP97313 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
PrkdcP97313 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
PrkdcP97313 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
PrkdcP97313 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC12.44□□□□□ -0.42
PrkdcP97313 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC12.44□□□□□ -0.42
PrkdcP97313 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC12.44□□□□□ -0.42
PrkdcP97313 Arl3-201ENSMUST00000026009 822 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
PrkdcP97313 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
PrkdcP97313 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
PrkdcP97313 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
PrkdcP97313 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC12.44□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 35.6 ms