Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Msx1P13297 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC17.13■□□□□ 0.33
Msx1P13297 Gm37055-201ENSMUST00000191866 133 ntBASIC17.13■□□□□ 0.33
Msx1P13297 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC17.13■□□□□ 0.33
Msx1P13297 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Msx1P13297 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Msx1P13297 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Msx1P13297 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Msx1P13297 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Msx1P13297 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Msx1P13297 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Msx1P13297 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Msx1P13297 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Msx1P13297 Gm10698-201ENSMUST00000182663 604 ntBASIC17.12■□□□□ 0.33
Msx1P13297 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC17.12■□□□□ 0.33
Msx1P13297 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Msx1P13297 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Msx1P13297 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC17.12■□□□□ 0.33
Msx1P13297 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
Msx1P13297 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Msx1P13297 Nrn1-203ENSMUST00000223611 1443 ntBASIC17.12■□□□□ 0.33
Msx1P13297 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Msx1P13297 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Msx1P13297 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC17.11■□□□□ 0.33
Msx1P13297 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Msx1P13297 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Msx1P13297 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Msx1P13297 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Msx1P13297 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Msx1P13297 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Msx1P13297 Gm11249-201ENSMUST00000117071 859 ntBASIC17.11■□□□□ 0.33
Msx1P13297 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC17.11■□□□□ 0.33
Msx1P13297 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Msx1P13297 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Msx1P13297 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
Msx1P13297 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC17.11■□□□□ 0.33
Msx1P13297 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Msx1P13297 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
Msx1P13297 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Msx1P13297 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Msx1P13297 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Msx1P13297 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Msx1P13297 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Msx1P13297 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC17.11■□□□□ 0.33
Msx1P13297 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Msx1P13297 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Msx1P13297 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Msx1P13297 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Msx1P13297 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC17.1■□□□□ 0.33
Msx1P13297 Gm44549-201ENSMUST00000208351 577 ntBASIC17.1■□□□□ 0.33
Msx1P13297 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC17.1■□□□□ 0.33
Msx1P13297 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Msx1P13297 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Msx1P13297 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Msx1P13297 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Msx1P13297 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Msx1P13297 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Msx1P13297 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Msx1P13297 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Msx1P13297 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Msx1P13297 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Msx1P13297 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Msx1P13297 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Msx1P13297 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Msx1P13297 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Msx1P13297 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC17.09■□□□□ 0.33
Msx1P13297 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC17.09■□□□□ 0.33
Msx1P13297 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Msx1P13297 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Msx1P13297 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC17.09■□□□□ 0.33
Msx1P13297 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Msx1P13297 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Msx1P13297 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC17.08■□□□□ 0.33
Msx1P13297 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Msx1P13297 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Msx1P13297 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
Msx1P13297 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Msx1P13297 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Msx1P13297 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Msx1P13297 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Msx1P13297 Gm15378-201ENSMUST00000121894 207 ntBASIC17.08■□□□□ 0.32
Msx1P13297 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC17.08■□□□□ 0.32
Msx1P13297 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Msx1P13297 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
Msx1P13297 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC17.08■□□□□ 0.32
Msx1P13297 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Msx1P13297 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Msx1P13297 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC17.07■□□□□ 0.32
Msx1P13297 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Msx1P13297 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Msx1P13297 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
Msx1P13297 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Msx1P13297 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Msx1P13297 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC17.07■□□□□ 0.32
Msx1P13297 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Msx1P13297 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
Msx1P13297 Mir1199-201ENSMUST00000117015 119 ntBASIC17.07■□□□□ 0.32
Msx1P13297 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC17.07■□□□□ 0.32
Msx1P13297 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Msx1P13297 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC17.07■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 25.3 ms