Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col1a1P11087 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col1a1P11087 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col1a1P11087 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC21.25■□□□□ 0.99
Col1a1P11087 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
Col1a1P11087 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Col1a1P11087 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Col1a1P11087 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Col1a1P11087 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col1a1P11087 Gm17661-201ENSMUST00000170317 270 ntBASIC21.25■□□□□ 0.99
Col1a1P11087 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC21.25■□□□□ 0.99
Col1a1P11087 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col1a1P11087 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Col1a1P11087 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Col1a1P11087 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Col1a1P11087 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Col1a1P11087 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col1a1P11087 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col1a1P11087 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
Col1a1P11087 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col1a1P11087 Gm4217-201ENSMUST00000182243 1002 ntBASIC21.24■□□□□ 0.99
Col1a1P11087 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col1a1P11087 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col1a1P11087 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col1a1P11087 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Col1a1P11087 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Col1a1P11087 Gm15853-202ENSMUST00000195518 2041 ntBASIC21.23■□□□□ 0.99
Col1a1P11087 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC21.23■□□□□ 0.99
Col1a1P11087 Gm9694-201ENSMUST00000193347 1189 ntBASIC21.23■□□□□ 0.99
Col1a1P11087 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Col1a1P11087 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
Col1a1P11087 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Col1a1P11087 AC108858.1-201ENSMUST00000228461 1498 ntBASIC21.23■□□□□ 0.99
Col1a1P11087 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Col1a1P11087 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Col1a1P11087 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Col1a1P11087 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
Col1a1P11087 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
Col1a1P11087 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col1a1P11087 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC21.22■□□□□ 0.99
Col1a1P11087 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col1a1P11087 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col1a1P11087 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Col1a1P11087 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col1a1P11087 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col1a1P11087 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col1a1P11087 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC21.22■□□□□ 0.99
Col1a1P11087 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col1a1P11087 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col1a1P11087 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col1a1P11087 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Col1a1P11087 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC21.21■□□□□ 0.99
Col1a1P11087 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col1a1P11087 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col1a1P11087 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC21.21■□□□□ 0.99
Col1a1P11087 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Col1a1P11087 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col1a1P11087 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC21.21■□□□□ 0.99
Col1a1P11087 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col1a1P11087 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col1a1P11087 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col1a1P11087 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col1a1P11087 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col1a1P11087 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col1a1P11087 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.99
Col1a1P11087 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col1a1P11087 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC21.2■□□□□ 0.98
Col1a1P11087 Gm13474-201ENSMUST00000122466 815 ntBASIC21.2■□□□□ 0.98
Col1a1P11087 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC21.2■□□□□ 0.98
Col1a1P11087 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC21.2■□□□□ 0.98
Col1a1P11087 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC21.2■□□□□ 0.98
Col1a1P11087 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC21.2■□□□□ 0.98
Col1a1P11087 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col1a1P11087 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col1a1P11087 Gm38345-201ENSMUST00000192635 1748 ntBASIC21.2■□□□□ 0.98
Col1a1P11087 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
Col1a1P11087 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col1a1P11087 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col1a1P11087 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col1a1P11087 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col1a1P11087 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC21.2■□□□□ 0.98
Col1a1P11087 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC21.2■□□□□ 0.98
Col1a1P11087 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col1a1P11087 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col1a1P11087 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Col1a1P11087 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col1a1P11087 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col1a1P11087 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Col1a1P11087 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC21.19■□□□□ 0.98
Col1a1P11087 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC21.18■□□□□ 0.98
Col1a1P11087 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Col1a1P11087 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Col1a1P11087 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Col1a1P11087 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Col1a1P11087 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col1a1P11087 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Col1a1P11087 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col1a1P11087 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC21.18■□□□□ 0.98
Col1a1P11087 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC21.18■□□□□ 0.98
Col1a1P11087 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 19.1 ms