Protein–RNA interactions for Protein: O70400

Pdlim1, PDZ and LIM domain protein 1, mousemouse

Predictions only

Length 327 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pdlim1O70400 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
Pdlim1O70400 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Pdlim1O70400 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC17.83■□□□□ 0.44
Pdlim1O70400 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.44
Pdlim1O70400 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC17.82■□□□□ 0.44
Pdlim1O70400 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Pdlim1O70400 AC123834.2-201ENSMUST00000224038 2340 ntBASIC17.82■□□□□ 0.44
Pdlim1O70400 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Pdlim1O70400 Gm20760-201ENSMUST00000179197 648 ntBASIC17.82■□□□□ 0.44
Pdlim1O70400 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Pdlim1O70400 Trmt13-210ENSMUST00000198454 880 ntBASIC17.82■□□□□ 0.44
Pdlim1O70400 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC17.82■□□□□ 0.44
Pdlim1O70400 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Pdlim1O70400 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Pdlim1O70400 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Pdlim1O70400 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Pdlim1O70400 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Pdlim1O70400 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC17.82■□□□□ 0.44
Pdlim1O70400 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC17.81■□□□□ 0.44
Pdlim1O70400 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Pdlim1O70400 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Pdlim1O70400 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Pdlim1O70400 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Pdlim1O70400 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Pdlim1O70400 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Pdlim1O70400 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC17.81■□□□□ 0.44
Pdlim1O70400 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Pdlim1O70400 AC135637.1-201ENSMUST00000227750 365 ntBASIC17.81■□□□□ 0.44
Pdlim1O70400 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Pdlim1O70400 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Pdlim1O70400 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Pdlim1O70400 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Pdlim1O70400 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Pdlim1O70400 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Pdlim1O70400 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Pdlim1O70400 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Pdlim1O70400 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Pdlim1O70400 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Pdlim1O70400 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Pdlim1O70400 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC17.8■□□□□ 0.44
Pdlim1O70400 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Pdlim1O70400 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Pdlim1O70400 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Pdlim1O70400 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Pdlim1O70400 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Pdlim1O70400 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC17.8■□□□□ 0.44
Pdlim1O70400 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Pdlim1O70400 Gm27275-201ENSMUST00000184318 272 ntBASIC17.8■□□□□ 0.44
Pdlim1O70400 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Pdlim1O70400 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC17.8■□□□□ 0.44
Pdlim1O70400 Spcs1-207ENSMUST00000228767 1008 ntBASIC17.8■□□□□ 0.44
Pdlim1O70400 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC17.8■□□□□ 0.44
Pdlim1O70400 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
Pdlim1O70400 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Pdlim1O70400 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Pdlim1O70400 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC17.8■□□□□ 0.44
Pdlim1O70400 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Pdlim1O70400 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Pdlim1O70400 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Pdlim1O70400 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Pdlim1O70400 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Pdlim1O70400 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Pdlim1O70400 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Pdlim1O70400 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Pdlim1O70400 Gm13158-201ENSMUST00000122007 736 ntBASIC17.79■□□□□ 0.44
Pdlim1O70400 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC17.79■□□□□ 0.44
Pdlim1O70400 AC163280.1-201ENSMUST00000228194 1100 ntBASIC17.79■□□□□ 0.44
Pdlim1O70400 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Pdlim1O70400 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Pdlim1O70400 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Pdlim1O70400 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Pdlim1O70400 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Pdlim1O70400 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Pdlim1O70400 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Pdlim1O70400 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Pdlim1O70400 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Pdlim1O70400 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Pdlim1O70400 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Pdlim1O70400 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Pdlim1O70400 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Pdlim1O70400 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Pdlim1O70400 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Pdlim1O70400 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Pdlim1O70400 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC17.78■□□□□ 0.44
Pdlim1O70400 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC17.78■□□□□ 0.44
Pdlim1O70400 Gm44878-201ENSMUST00000205812 1295 ntBASIC17.78■□□□□ 0.44
Pdlim1O70400 Gm10138-203ENSMUST00000206952 366 ntBASIC17.78■□□□□ 0.44
Pdlim1O70400 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC17.78■□□□□ 0.44
Pdlim1O70400 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Pdlim1O70400 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Pdlim1O70400 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Pdlim1O70400 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Pdlim1O70400 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Pdlim1O70400 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Pdlim1O70400 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC17.77■□□□□ 0.44
Pdlim1O70400 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
Pdlim1O70400 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC17.77■□□□□ 0.44
Pdlim1O70400 Gm18666-201ENSMUST00000190039 958 ntBASIC17.77■□□□□ 0.44
Pdlim1O70400 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC17.77■□□□□ 0.44
Pdlim1O70400 Dmtn-210ENSMUST00000228824 2377 ntBASIC17.77■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 33.2 ms