Protein–RNA interactions for Protein: E9PWQ3

Col6a3, Collagen, type VI, alpha 3, mousemouse

Predictions only

Length 3,284 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a3E9PWQ3 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC18.24■□□□□ 0.51
Col6a3E9PWQ3 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC18.24■□□□□ 0.51
Col6a3E9PWQ3 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Col6a3E9PWQ3 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col6a3E9PWQ3 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col6a3E9PWQ3 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col6a3E9PWQ3 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Col6a3E9PWQ3 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col6a3E9PWQ3 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col6a3E9PWQ3 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC18.23■□□□□ 0.51
Col6a3E9PWQ3 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col6a3E9PWQ3 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Col6a3E9PWQ3 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC18.22■□□□□ 0.51
Col6a3E9PWQ3 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Col6a3E9PWQ3 AC161829.1-201ENSMUST00000220298 281 ntBASIC18.22■□□□□ 0.51
Col6a3E9PWQ3 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
Col6a3E9PWQ3 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Col6a3E9PWQ3 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC18.22■□□□□ 0.51
Col6a3E9PWQ3 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC18.22■□□□□ 0.51
Col6a3E9PWQ3 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Col6a3E9PWQ3 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Col6a3E9PWQ3 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Col6a3E9PWQ3 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Col6a3E9PWQ3 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col6a3E9PWQ3 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
Col6a3E9PWQ3 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC18.22■□□□□ 0.51
Col6a3E9PWQ3 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col6a3E9PWQ3 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col6a3E9PWQ3 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
Col6a3E9PWQ3 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col6a3E9PWQ3 Gm5364-201ENSMUST00000216789 889 ntBASIC18.21■□□□□ 0.51
Col6a3E9PWQ3 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col6a3E9PWQ3 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col6a3E9PWQ3 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col6a3E9PWQ3 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col6a3E9PWQ3 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Col6a3E9PWQ3 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col6a3E9PWQ3 Olfr129-201ENSMUST00000122318 993 ntBASIC18.21■□□□□ 0.51
Col6a3E9PWQ3 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC18.21■□□□□ 0.51
Col6a3E9PWQ3 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Col6a3E9PWQ3 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col6a3E9PWQ3 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Col6a3E9PWQ3 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col6a3E9PWQ3 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col6a3E9PWQ3 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC18.2■□□□□ 0.5
Col6a3E9PWQ3 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Col6a3E9PWQ3 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col6a3E9PWQ3 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col6a3E9PWQ3 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col6a3E9PWQ3 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Col6a3E9PWQ3 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col6a3E9PWQ3 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col6a3E9PWQ3 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC18.2■□□□□ 0.5
Col6a3E9PWQ3 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col6a3E9PWQ3 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC18.2■□□□□ 0.5
Col6a3E9PWQ3 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Col6a3E9PWQ3 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col6a3E9PWQ3 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
Col6a3E9PWQ3 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col6a3E9PWQ3 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col6a3E9PWQ3 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC18.19■□□□□ 0.5
Col6a3E9PWQ3 Gm12350-201ENSMUST00000121208 462 ntBASIC18.19■□□□□ 0.5
Col6a3E9PWQ3 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC18.19■□□□□ 0.5
Col6a3E9PWQ3 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col6a3E9PWQ3 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col6a3E9PWQ3 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Col6a3E9PWQ3 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Col6a3E9PWQ3 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col6a3E9PWQ3 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Col6a3E9PWQ3 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC18.19■□□□□ 0.5
Col6a3E9PWQ3 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col6a3E9PWQ3 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col6a3E9PWQ3 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC18.18■□□□□ 0.5
Col6a3E9PWQ3 AC138767.1-201ENSMUST00000222661 415 ntBASIC18.18■□□□□ 0.5
Col6a3E9PWQ3 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Col6a3E9PWQ3 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col6a3E9PWQ3 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC18.18■□□□□ 0.5
Col6a3E9PWQ3 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Col6a3E9PWQ3 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC18.18■□□□□ 0.5
Col6a3E9PWQ3 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Col6a3E9PWQ3 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col6a3E9PWQ3 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Col6a3E9PWQ3 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col6a3E9PWQ3 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC18.18■□□□□ 0.5
Col6a3E9PWQ3 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC18.17■□□□□ 0.5
Col6a3E9PWQ3 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col6a3E9PWQ3 Gm11779-201ENSMUST00000118541 368 ntBASIC18.17■□□□□ 0.5
Col6a3E9PWQ3 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC18.17■□□□□ 0.5
Col6a3E9PWQ3 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Col6a3E9PWQ3 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col6a3E9PWQ3 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col6a3E9PWQ3 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col6a3E9PWQ3 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col6a3E9PWQ3 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col6a3E9PWQ3 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col6a3E9PWQ3 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col6a3E9PWQ3 AC160393.1-201ENSMUST00000218378 1279 ntBASIC18.16■□□□□ 0.5
Col6a3E9PWQ3 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col6a3E9PWQ3 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Col6a3E9PWQ3 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC18.16■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 19.8 ms