Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Chd3B1AR17 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC17.72■□□□□ 0.43
Chd3B1AR17 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Chd3B1AR17 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
Chd3B1AR17 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC17.72■□□□□ 0.43
Chd3B1AR17 Gm37292-201ENSMUST00000192062 758 ntBASIC17.72■□□□□ 0.43
Chd3B1AR17 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Chd3B1AR17 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Chd3B1AR17 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Chd3B1AR17 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Chd3B1AR17 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Chd3B1AR17 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Chd3B1AR17 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Chd3B1AR17 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Chd3B1AR17 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC17.71■□□□□ 0.43
Chd3B1AR17 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Chd3B1AR17 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
Chd3B1AR17 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Chd3B1AR17 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Chd3B1AR17 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Chd3B1AR17 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Chd3B1AR17 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Chd3B1AR17 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Chd3B1AR17 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
Chd3B1AR17 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Chd3B1AR17 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC17.71■□□□□ 0.43
Chd3B1AR17 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Chd3B1AR17 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Chd3B1AR17 Dmtn-210ENSMUST00000228824 2377 ntBASIC17.71■□□□□ 0.43
Chd3B1AR17 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Chd3B1AR17 Fst-202ENSMUST00000223640 2612 ntBASIC17.7■□□□□ 0.42
Chd3B1AR17 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC17.7■□□□□ 0.42
Chd3B1AR17 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Chd3B1AR17 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Chd3B1AR17 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC17.7■□□□□ 0.42
Chd3B1AR17 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC17.7■□□□□ 0.42
Chd3B1AR17 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Chd3B1AR17 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Chd3B1AR17 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC17.7■□□□□ 0.42
Chd3B1AR17 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC17.7■□□□□ 0.42
Chd3B1AR17 AC121961.1-201ENSMUST00000218594 1779 ntBASIC17.7■□□□□ 0.42
Chd3B1AR17 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Chd3B1AR17 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Chd3B1AR17 Gm43183-201ENSMUST00000200632 547 ntBASIC17.7■□□□□ 0.42
Chd3B1AR17 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Chd3B1AR17 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Chd3B1AR17 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Chd3B1AR17 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Chd3B1AR17 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Chd3B1AR17 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Chd3B1AR17 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Chd3B1AR17 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Chd3B1AR17 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Chd3B1AR17 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Chd3B1AR17 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Chd3B1AR17 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC17.69■□□□□ 0.42
Chd3B1AR17 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC17.69■□□□□ 0.42
Chd3B1AR17 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Chd3B1AR17 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Chd3B1AR17 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Chd3B1AR17 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Chd3B1AR17 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Chd3B1AR17 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Chd3B1AR17 Tgds-204ENSMUST00000228543 1594 ntBASIC17.68■□□□□ 0.42
Chd3B1AR17 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Chd3B1AR17 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Chd3B1AR17 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC17.68■□□□□ 0.42
Chd3B1AR17 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Chd3B1AR17 Gm10654-201ENSMUST00000098653 1633 ntBASIC17.68■□□□□ 0.42
Chd3B1AR17 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Chd3B1AR17 Gm43799-201ENSMUST00000201845 579 ntBASIC17.68■□□□□ 0.42
Chd3B1AR17 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Chd3B1AR17 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Chd3B1AR17 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Chd3B1AR17 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Chd3B1AR17 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Chd3B1AR17 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC17.67■□□□□ 0.42
Chd3B1AR17 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Chd3B1AR17 Gm29994-201ENSMUST00000195495 1193 ntBASIC17.67■□□□□ 0.42
Chd3B1AR17 Arhgef4-208ENSMUST00000211073 171 ntBASIC17.67■□□□□ 0.42
Chd3B1AR17 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Chd3B1AR17 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
Chd3B1AR17 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Chd3B1AR17 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Chd3B1AR17 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
Chd3B1AR17 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC17.67■□□□□ 0.42
Chd3B1AR17 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Chd3B1AR17 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Chd3B1AR17 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Chd3B1AR17 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Chd3B1AR17 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Chd3B1AR17 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Chd3B1AR17 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Chd3B1AR17 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
Chd3B1AR17 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Chd3B1AR17 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Chd3B1AR17 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC17.65■□□□□ 0.42
Chd3B1AR17 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Chd3B1AR17 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Chd3B1AR17 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 19.8 ms