Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Pcdhgb8A0A140LI48 Gm12933-201ENSMUST00000120203 872 ntBASIC16.3■□□□□ 0.2
Pcdhgb8A0A140LI48 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Pcdhgb8A0A140LI48 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC16.3■□□□□ 0.2
Pcdhgb8A0A140LI48 CT030146.1-201ENSMUST00000220919 217 ntBASIC16.3■□□□□ 0.2
Pcdhgb8A0A140LI48 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Pcdhgb8A0A140LI48 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Pcdhgb8A0A140LI48 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Pcdhgb8A0A140LI48 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Pcdhgb8A0A140LI48 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Pcdhgb8A0A140LI48 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Pcdhgb8A0A140LI48 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
Pcdhgb8A0A140LI48 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Pcdhgb8A0A140LI48 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Pcdhgb8A0A140LI48 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Pcdhgb8A0A140LI48 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Pcdhgb8A0A140LI48 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Pcdhgb8A0A140LI48 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Pcdhgb8A0A140LI48 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Pcdhgb8A0A140LI48 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Pcdhgb8A0A140LI48 Gm6598-201ENSMUST00000202719 2615 ntBASIC16.29■□□□□ 0.2
Pcdhgb8A0A140LI48 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Pcdhgb8A0A140LI48 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
Pcdhgb8A0A140LI48 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Pcdhgb8A0A140LI48 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Pcdhgb8A0A140LI48 Gm15635-204ENSMUST00000208024 2539 ntBASIC16.29■□□□□ 0.2
Pcdhgb8A0A140LI48 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Pcdhgb8A0A140LI48 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Pcdhgb8A0A140LI48 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Pcdhgb8A0A140LI48 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Pcdhgb8A0A140LI48 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Pcdhgb8A0A140LI48 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Pcdhgb8A0A140LI48 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Pcdhgb8A0A140LI48 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Pcdhgb8A0A140LI48 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Pcdhgb8A0A140LI48 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Pcdhgb8A0A140LI48 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Pcdhgb8A0A140LI48 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Pcdhgb8A0A140LI48 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Pcdhgb8A0A140LI48 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Pcdhgb8A0A140LI48 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Pcdhgb8A0A140LI48 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Pcdhgb8A0A140LI48 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC16.28■□□□□ 0.2
Pcdhgb8A0A140LI48 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Pcdhgb8A0A140LI48 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC16.28■□□□□ 0.2
Pcdhgb8A0A140LI48 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Pcdhgb8A0A140LI48 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Pcdhgb8A0A140LI48 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Pcdhgb8A0A140LI48 Gm45244-201ENSMUST00000211328 2200 ntBASIC16.28■□□□□ 0.2
Pcdhgb8A0A140LI48 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Pcdhgb8A0A140LI48 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Pcdhgb8A0A140LI48 Gm37352-201ENSMUST00000193908 2181 ntBASIC16.28■□□□□ 0.2
Pcdhgb8A0A140LI48 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
Pcdhgb8A0A140LI48 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Pcdhgb8A0A140LI48 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Pcdhgb8A0A140LI48 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Pcdhgb8A0A140LI48 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Pcdhgb8A0A140LI48 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Pcdhgb8A0A140LI48 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Pcdhgb8A0A140LI48 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Pcdhgb8A0A140LI48 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Pcdhgb8A0A140LI48 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
Pcdhgb8A0A140LI48 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Pcdhgb8A0A140LI48 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Pcdhgb8A0A140LI48 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Pcdhgb8A0A140LI48 Gm13146-201ENSMUST00000118508 780 ntBASIC16.27■□□□□ 0.2
Pcdhgb8A0A140LI48 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Pcdhgb8A0A140LI48 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Pcdhgb8A0A140LI48 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
Pcdhgb8A0A140LI48 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Pcdhgb8A0A140LI48 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
Pcdhgb8A0A140LI48 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Pcdhgb8A0A140LI48 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Pcdhgb8A0A140LI48 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Pcdhgb8A0A140LI48 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Pcdhgb8A0A140LI48 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
Pcdhgb8A0A140LI48 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Pcdhgb8A0A140LI48 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Pcdhgb8A0A140LI48 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Pcdhgb8A0A140LI48 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Pcdhgb8A0A140LI48 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Pcdhgb8A0A140LI48 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Pcdhgb8A0A140LI48 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Pcdhgb8A0A140LI48 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Pcdhgb8A0A140LI48 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Pcdhgb8A0A140LI48 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Pcdhgb8A0A140LI48 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
Pcdhgb8A0A140LI48 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC16.26■□□□□ 0.19
Pcdhgb8A0A140LI48 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC16.26■□□□□ 0.19
Pcdhgb8A0A140LI48 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC16.26■□□□□ 0.19
Pcdhgb8A0A140LI48 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Pcdhgb8A0A140LI48 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Pcdhgb8A0A140LI48 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Pcdhgb8A0A140LI48 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
Pcdhgb8A0A140LI48 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
Pcdhgb8A0A140LI48 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
Pcdhgb8A0A140LI48 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Pcdhgb8A0A140LI48 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Pcdhgb8A0A140LI48 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Pcdhgb8A0A140LI48 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 56 ms