Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Raet1d-201ENSMUST00000095795 1271 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
Upf3bQ3ULL6 Plcb4-202ENSMUST00000110109 5217 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
Upf3bQ3ULL6 Mat2a-201ENSMUST00000059472 2804 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
Upf3bQ3ULL6 Nedd4-207ENSMUST00000184333 4034 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
Upf3bQ3ULL6 Gm21955-201ENSMUST00000194137 4968 ntBASIC6.74□□□□□ -1.33
Upf3bQ3ULL6 Olfr1381-202ENSMUST00000213256 4954 ntAPPRIS P1 TSL 5 BASIC6.74□□□□□ -1.33
Upf3bQ3ULL6 Cntnap5a-201ENSMUST00000043725 10945 ntAPPRIS P1 TSL 2 BASIC6.74□□□□□ -1.33
Upf3bQ3ULL6 Lmbrd2-201ENSMUST00000090380 3210 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
Upf3bQ3ULL6 Chek1-201ENSMUST00000034625 3397 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
Upf3bQ3ULL6 Gm9602-201ENSMUST00000163325 2062 ntAPPRIS P5 TSL 1 (best) BASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Gm8356-201ENSMUST00000163636 2062 ntAPPRIS P5 TSL 5 BASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 AC114585.1-201ENSMUST00000228080 3680 ntBASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Trim16-203ENSMUST00000108703 3574 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Vmn2r13-201ENSMUST00000053253 2496 ntAPPRIS P1 TSL 5 BASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Kif27-201ENSMUST00000043605 4462 ntAPPRIS P1 TSL 5 BASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Kcnj16-202ENSMUST00000106636 3623 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Heph-203ENSMUST00000113838 4611 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Gm44045-201ENSMUST00000204906 2520 ntBASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Pias1-201ENSMUST00000098651 5564 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Cyp2c29-202ENSMUST00000176624 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Gm11271-201ENSMUST00000116054 440 ntBASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Prelid3b-202ENSMUST00000117442 683 ntTSL 3 BASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Gm12442-201ENSMUST00000118372 338 ntBASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Gm15765-201ENSMUST00000118407 910 ntBASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Gm15967-201ENSMUST00000120027 1116 ntBASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Gm12451-201ENSMUST00000121636 633 ntBASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Gm6067-201ENSMUST00000121648 491 ntBASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Gm4789-201ENSMUST00000121708 1216 ntBASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Ndufb5-203ENSMUST00000122290 625 ntTSL 2 BASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Gm13669-201ENSMUST00000122366 457 ntBASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Lrrc75aos1-201ENSMUST00000142492 779 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Gm12414-201ENSMUST00000150794 494 ntTSL 5 BASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Gm26046-201ENSMUST00000157312 166 ntBASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Gm26353-201ENSMUST00000158224 255 ntBASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Cfhr3-201ENSMUST00000170441 1022 ntBASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Obox3-ps1-201ENSMUST00000176885 995 ntBASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Rps16-ps3-201ENSMUST00000179126 441 ntBASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Gm26804-201ENSMUST00000181248 1017 ntTSL 5 BASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 7630403G23Rik-201ENSMUST00000184229 1084 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Mlip-214ENSMUST00000185039 1295 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Gm18700-201ENSMUST00000185791 553 ntBASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 1810041H14Rik-202ENSMUST00000187218 434 ntTSL 3 BASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 1700051K13Rik-201ENSMUST00000204426 696 ntBASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Olfr396-ps1-202ENSMUST00000205791 633 ntBASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Gm45267-201ENSMUST00000211028 522 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Gm45448-201ENSMUST00000211739 209 ntBASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 4930455C13Rik-201ENSMUST00000218108 1018 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Gm35188-201ENSMUST00000218869 535 ntTSL 3 BASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 AC159979.1-201ENSMUST00000227927 342 ntBASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 AC123533.2-201ENSMUST00000228176 375 ntBASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Olfr771-201ENSMUST00000078914 954 ntAPPRIS P1 BASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Rasef-201ENSMUST00000058292 5183 ntTSL 5 BASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Gm32568-201ENSMUST00000212782 1421 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 AC141476.1-201ENSMUST00000224988 3387 ntBASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Spin4-201ENSMUST00000096367 4173 ntAPPRIS P1 BASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Gm37183-201ENSMUST00000191712 3405 ntBASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Spam1-202ENSMUST00000202331 2100 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Mbd3l2-202ENSMUST00000213777 2116 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Lrrc49-201ENSMUST00000053171 3086 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Gm37721-202ENSMUST00000194673 1498 ntTSL 5 BASIC6.73□□□□□ -1.33
Upf3bQ3ULL6 Lrrtm4-201ENSMUST00000074662 3383 ntTSL 2 BASIC6.72□□□□□ -1.33
Upf3bQ3ULL6 Mettl4-201ENSMUST00000171284 2150 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
Upf3bQ3ULL6 Cnga1-201ENSMUST00000087213 2739 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
Upf3bQ3ULL6 Ptprd-213ENSMUST00000173376 4793 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
Upf3bQ3ULL6 Ttk-201ENSMUST00000070326 2871 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
Upf3bQ3ULL6 Zfp825-203ENSMUST00000221173 1549 ntAPPRIS ALT2 TSL 3 BASIC6.72□□□□□ -1.33
Upf3bQ3ULL6 Vmn1r184-203ENSMUST00000227232 8472 ntAPPRIS P1 BASIC6.72□□□□□ -1.33
Upf3bQ3ULL6 C1s1-203ENSMUST00000160505 2946 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
Upf3bQ3ULL6 Atf2-206ENSMUST00000112016 3943 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
Upf3bQ3ULL6 Adam30-201ENSMUST00000050342 3510 ntAPPRIS P1 BASIC6.72□□□□□ -1.33
Upf3bQ3ULL6 Vmn1r181-203ENSMUST00000226978 4371 ntAPPRIS P1 BASIC6.72□□□□□ -1.33
Upf3bQ3ULL6 2700049A03Rik-201ENSMUST00000045907 4507 ntAPPRIS ALT2 TSL 1 (best) BASIC6.72□□□□□ -1.33
Upf3bQ3ULL6 Gm15293-201ENSMUST00000110754 418 ntAPPRIS P1 TSL 5 BASIC6.72□□□□□ -1.33
Upf3bQ3ULL6 Gm11256-201ENSMUST00000118109 829 ntBASIC6.72□□□□□ -1.33
Upf3bQ3ULL6 Gm9506-201ENSMUST00000118516 320 ntBASIC6.72□□□□□ -1.33
Upf3bQ3ULL6 Gm13740-201ENSMUST00000120590 310 ntBASIC6.72□□□□□ -1.33
Upf3bQ3ULL6 Gm15596-201ENSMUST00000121139 784 ntBASIC6.72□□□□□ -1.33
Upf3bQ3ULL6 Gm22119-201ENSMUST00000175594 99 ntBASIC6.72□□□□□ -1.33
Upf3bQ3ULL6 Gm10428-201ENSMUST00000178750 399 ntAPPRIS P1 BASIC6.72□□□□□ -1.33
Upf3bQ3ULL6 Gm29650-201ENSMUST00000188485 742 ntBASIC6.72□□□□□ -1.33
Upf3bQ3ULL6 Gm42865-201ENSMUST00000197981 613 ntTSL 3 BASIC6.72□□□□□ -1.33
Upf3bQ3ULL6 Gm42951-201ENSMUST00000199688 684 ntTSL 5 BASIC6.72□□□□□ -1.33
Upf3bQ3ULL6 Gm44374-201ENSMUST00000199821 140 ntBASIC6.72□□□□□ -1.33
Upf3bQ3ULL6 Gm33651-201ENSMUST00000200405 456 ntTSL 5 BASIC6.72□□□□□ -1.33
Upf3bQ3ULL6 Gm43772-201ENSMUST00000202052 379 ntBASIC6.72□□□□□ -1.33
Upf3bQ3ULL6 Gm44075-201ENSMUST00000204208 216 ntBASIC6.72□□□□□ -1.33
Upf3bQ3ULL6 Gm34225-201ENSMUST00000205469 443 ntTSL 5 BASIC6.72□□□□□ -1.33
Upf3bQ3ULL6 AC153557.1-201ENSMUST00000217697 403 ntBASIC6.72□□□□□ -1.33
Upf3bQ3ULL6 Gm9293-201ENSMUST00000223096 306 ntBASIC6.72□□□□□ -1.33
Upf3bQ3ULL6 AC113031.1-201ENSMUST00000227400 432 ntBASIC6.72□□□□□ -1.33
Upf3bQ3ULL6 Ssmem1-202ENSMUST00000031798 1155 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
Upf3bQ3ULL6 Gm24032-201ENSMUST00000083932 159 ntBASIC6.72□□□□□ -1.33
Upf3bQ3ULL6 9930038B18Rik-201ENSMUST00000151816 3966 ntTSL 5 BASIC6.72□□□□□ -1.33
Upf3bQ3ULL6 Gm765-201ENSMUST00000164491 3132 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
Upf3bQ3ULL6 Olfr308-202ENSMUST00000214977 4991 ntAPPRIS P1 TSL 5 BASIC6.72□□□□□ -1.33
Upf3bQ3ULL6 AC131687.1-201ENSMUST00000225931 5446 ntBASIC6.72□□□□□ -1.33
Upf3bQ3ULL6 Gm43502-201ENSMUST00000200263 2596 ntBASIC6.72□□□□□ -1.33
Upf3bQ3ULL6 Zfp74-202ENSMUST00000108205 3711 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
Upf3bQ3ULL6 Gramd1c-203ENSMUST00000179565 3159 ntTSL 5 BASIC6.72□□□□□ -1.33
Upf3bQ3ULL6 Atp13a5-203ENSMUST00000143373 3789 ntAPPRIS ALT2 TSL 1 (best) BASIC6.72□□□□□ -1.33
Retrieved 100 of 76,532 protein–RNA pairs in 190.6 ms