Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Gm42109-202ENSMUST00000200893 664 ntTSL 3 BASIC9.72□□□□□ -0.85
Cux1P53564 S100g-201ENSMUST00000038769 480 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Cux1P53564 Saa4-201ENSMUST00000006952 2094 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.85
Cux1P53564 Sp100-212ENSMUST00000153574 1653 ntTSL 5 BASIC9.71□□□□□ -0.85
Cux1P53564 C79798-201ENSMUST00000131588 1793 ntTSL 1 (best) BASIC9.71□□□□□ -0.85
Cux1P53564 Celf2-226ENSMUST00000183209 3852 ntTSL 1 (best) BASIC9.71□□□□□ -0.85
Cux1P53564 9930111J21Rik1-202ENSMUST00000097494 3863 ntAPPRIS P1 TSL 5 BASIC9.71□□□□□ -0.85
Cux1P53564 Tcf7l2-209ENSMUST00000111656 3629 ntAPPRIS ALT2 TSL 1 (best) BASIC9.71□□□□□ -0.86
Cux1P53564 Aadacl3-201ENSMUST00000105749 3153 ntAPPRIS P1 TSL 5 BASIC9.71□□□□□ -0.86
Cux1P53564 Olfr1247-203ENSMUST00000216424 2164 ntAPPRIS P1 TSL 5 BASIC9.71□□□□□ -0.86
Cux1P53564 Olfr1278-206ENSMUST00000216229 6819 ntAPPRIS P1 TSL 5 BASIC9.71□□□□□ -0.86
Cux1P53564 Cwf19l1-201ENSMUST00000026218 3574 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.86
Cux1P53564 Gm19719-201ENSMUST00000200934 4230 ntTSL 1 (best) BASIC9.71□□□□□ -0.86
Cux1P53564 Ttc41-201ENSMUST00000061458 1815 ntTSL 1 (best) BASIC9.71□□□□□ -0.86
Cux1P53564 Alcam-207ENSMUST00000170035 1917 ntTSL 5 BASIC9.71□□□□□ -0.86
Cux1P53564 Ighv8-12-201ENSMUST00000103540 315 ntAPPRIS P1 BASIC9.71□□□□□ -0.86
Cux1P53564 Trav14n-3-201ENSMUST00000103635 280 ntAPPRIS P1 BASIC9.71□□□□□ -0.86
Cux1P53564 Gm14158-201ENSMUST00000118409 308 ntBASIC9.71□□□□□ -0.86
Cux1P53564 Gm8761-201ENSMUST00000121507 955 ntBASIC9.71□□□□□ -0.86
Cux1P53564 Gm8061-201ENSMUST00000122380 350 ntBASIC9.71□□□□□ -0.86
Cux1P53564 Gm12610-201ENSMUST00000139272 581 ntTSL 3 BASIC9.71□□□□□ -0.86
Cux1P53564 Gm8323-201ENSMUST00000168436 1201 ntBASIC9.71□□□□□ -0.86
Cux1P53564 Gm22690-201ENSMUST00000175054 110 ntBASIC9.71□□□□□ -0.86
Cux1P53564 Gm5624-202ENSMUST00000178184 492 ntAPPRIS ALT2 TSL 5 BASIC9.71□□□□□ -0.86
Cux1P53564 Gm2877-201ENSMUST00000178248 1204 ntBASIC9.71□□□□□ -0.86
Cux1P53564 Gm8324-201ENSMUST00000178911 1204 ntBASIC9.71□□□□□ -0.86
Cux1P53564 Gm2871-201ENSMUST00000179984 1204 ntBASIC9.71□□□□□ -0.86
Cux1P53564 Gm26923-201ENSMUST00000182615 996 ntBASIC9.71□□□□□ -0.86
Cux1P53564 Mir6992-201ENSMUST00000183342 109 ntBASIC9.71□□□□□ -0.86
Cux1P53564 4930590L14Rik-201ENSMUST00000196030 836 ntTSL 1 (best) BASIC9.71□□□□□ -0.86
Cux1P53564 AC134334.2-201ENSMUST00000214628 681 ntTSL 5 BASIC9.71□□□□□ -0.86
Cux1P53564 Gm32172-201ENSMUST00000220029 633 ntTSL 1 (best) BASIC9.71□□□□□ -0.86
Cux1P53564 Vmn1r233-201ENSMUST00000056339 960 ntAPPRIS P1 BASIC9.71□□□□□ -0.86
Cux1P53564 n-R5s89-201ENSMUST00000083532 104 ntBASIC9.71□□□□□ -0.86
Cux1P53564 Gm16503-201ENSMUST00000104964 3283 ntAPPRIS P1 BASIC9.71□□□□□ -0.86
Cux1P53564 Trim16-203ENSMUST00000108703 3574 ntTSL 1 (best) BASIC9.71□□□□□ -0.86
Cux1P53564 Ccdc82-206ENSMUST00000217444 4736 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.86
Cux1P53564 Ncor1-205ENSMUST00000101067 7243 ntAPPRIS ALT2 TSL 5 BASIC9.71□□□□□ -0.86
Cux1P53564 AC165260.6-204ENSMUST00000225571 3508 ntBASIC9.7□□□□□ -0.86
Cux1P53564 Scyl3-203ENSMUST00000161908 3718 ntAPPRIS ALT2 TSL 1 (best) BASIC9.7□□□□□ -0.86
Cux1P53564 Yy2-201ENSMUST00000065806 2867 ntAPPRIS P1 BASIC9.7□□□□□ -0.86
Cux1P53564 Olfr140-203ENSMUST00000216475 3574 ntAPPRIS P1 TSL 5 BASIC9.7□□□□□ -0.86
Cux1P53564 Psd3-204ENSMUST00000093469 4351 ntAPPRIS ALT2 TSL 5 BASIC9.7□□□□□ -0.86
Cux1P53564 Traf3-202ENSMUST00000060274 6896 ntTSL 5 BASIC9.7□□□□□ -0.86
Cux1P53564 Cc2d2b-203ENSMUST00000207801 3730 ntTSL 5 BASIC9.7□□□□□ -0.86
Cux1P53564 Slc17a6-201ENSMUST00000032710 4137 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
Cux1P53564 Gm5427-201ENSMUST00000217680 2591 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
Cux1P53564 Nwd1-209ENSMUST00000228312 10789 ntAPPRIS P1 BASIC9.7□□□□□ -0.86
Cux1P53564 Ate1-208ENSMUST00000216011 1680 ntAPPRIS ALT2 TSL 5 BASIC9.7□□□□□ -0.86
Cux1P53564 Gm15237-201ENSMUST00000122104 469 ntBASIC9.7□□□□□ -0.86
Cux1P53564 Dab2-209ENSMUST00000161040 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC9.7□□□□□ -0.86
Cux1P53564 Tmem258-204ENSMUST00000166412 447 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
Cux1P53564 Gm27004-201ENSMUST00000183300 727 ntBASIC9.7□□□□□ -0.86
Cux1P53564 Gm37774-201ENSMUST00000194401 245 ntBASIC9.7□□□□□ -0.86
Cux1P53564 Gm45874-201ENSMUST00000212423 346 ntBASIC9.7□□□□□ -0.86
Cux1P53564 Gm7557-201ENSMUST00000221935 865 ntBASIC9.7□□□□□ -0.86
Cux1P53564 AC192333.6-201ENSMUST00000224565 725 ntBASIC9.7□□□□□ -0.86
Cux1P53564 AC122034.1-201ENSMUST00000227641 595 ntBASIC9.7□□□□□ -0.86
Cux1P53564 Olfr107-201ENSMUST00000077008 1033 ntAPPRIS P1 BASIC9.7□□□□□ -0.86
Cux1P53564 Gm43279-201ENSMUST00000202376 2512 ntBASIC9.7□□□□□ -0.86
Cux1P53564 Taf13-204ENSMUST00000143054 2443 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
Cux1P53564 Gm15232-201ENSMUST00000146929 2318 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
Cux1P53564 Gabrq-201ENSMUST00000033711 2000 ntAPPRIS P3 TSL 1 (best) BASIC9.7□□□□□ -0.86
Cux1P53564 Lilrb4a-201ENSMUST00000217706 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC9.69□□□□□ -0.86
Cux1P53564 BC080695-202ENSMUST00000105774 2095 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Cux1P53564 Olfr1306-202ENSMUST00000214844 1893 ntAPPRIS P1 TSL 5 BASIC9.69□□□□□ -0.86
Cux1P53564 Gm34481-201ENSMUST00000214968 3374 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
Cux1P53564 Rtel1-201ENSMUST00000048608 4135 ntAPPRIS ALT2 TSL 1 (best) BASIC9.69□□□□□ -0.86
Cux1P53564 Ggta1-202ENSMUST00000079424 3254 ntAPPRIS ALT2 TSL 5 BASIC9.69□□□□□ -0.86
Cux1P53564 Gm20597-201ENSMUST00000218774 5486 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
Cux1P53564 Zfp934-209ENSMUST00000222746 2206 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
Cux1P53564 Catsperg2-209ENSMUST00000209126 3438 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Cux1P53564 Rlim-202ENSMUST00000121153 7439 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Cux1P53564 EPPK1-201ENSMUST00000226781 12325 ntAPPRIS P1 BASIC9.69□□□□□ -0.86
Cux1P53564 Gm12301-201ENSMUST00000152963 523 ntTSL 2 BASIC9.69□□□□□ -0.86
Cux1P53564 Mipepos-201ENSMUST00000155855 610 ntTSL 3 BASIC9.69□□□□□ -0.86
Cux1P53564 Srsx-201ENSMUST00000171714 1083 ntAPPRIS P1 BASIC9.69□□□□□ -0.86
Cux1P53564 Gm20069-201ENSMUST00000178938 545 ntTSL 2 BASIC9.69□□□□□ -0.86
Cux1P53564 Gm27006-201ENSMUST00000182218 943 ntBASIC9.69□□□□□ -0.86
Cux1P53564 Gm27201-201ENSMUST00000183818 416 ntTSL 3 BASIC9.69□□□□□ -0.86
Cux1P53564 Gm31659-201ENSMUST00000211989 481 ntTSL 3 BASIC9.69□□□□□ -0.86
Cux1P53564 CT030170.4-202ENSMUST00000221109 540 ntBASIC9.69□□□□□ -0.86
Cux1P53564 Gm2614-201ENSMUST00000223227 403 ntBASIC9.69□□□□□ -0.86
Cux1P53564 Gm24041-201ENSMUST00000083115 156 ntBASIC9.69□□□□□ -0.86
Cux1P53564 C430042M11Rik-201ENSMUST00000180515 1617 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
Cux1P53564 Cyp2c66-201ENSMUST00000087234 1630 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Cux1P53564 Scn11a-201ENSMUST00000070617 5837 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Cux1P53564 Senp7-203ENSMUST00000089362 4825 ntAPPRIS P2 TSL 1 (best) BASIC9.69□□□□□ -0.86
Cux1P53564 Gm17690-201ENSMUST00000180958 3467 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
Cux1P53564 Olfr374-202ENSMUST00000210435 8718 ntAPPRIS P1 TSL 2 BASIC9.68□□□□□ -0.86
Cux1P53564 Gm14373-201ENSMUST00000122467 2158 ntBASIC9.68□□□□□ -0.86
Cux1P53564 AC164437.5-201ENSMUST00000227235 4414 ntBASIC9.68□□□□□ -0.86
Cux1P53564 Txndc9-201ENSMUST00000162031 3381 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cux1P53564 Gm13451-201ENSMUST00000117649 592 ntBASIC9.68□□□□□ -0.86
Cux1P53564 Gm13811-201ENSMUST00000117800 256 ntBASIC9.68□□□□□ -0.86
Cux1P53564 Chchd7-204ENSMUST00000119403 695 ntAPPRIS P1 TSL 2 BASIC9.68□□□□□ -0.86
Cux1P53564 Gm16086-201ENSMUST00000143652 371 ntTSL 3 BASIC9.68□□□□□ -0.86
Cux1P53564 Gm13417-201ENSMUST00000155475 533 ntTSL 2 BASIC9.68□□□□□ -0.86
Cux1P53564 Gm23280-201ENSMUST00000157905 139 ntBASIC9.68□□□□□ -0.86
Cux1P53564 Gm16139-201ENSMUST00000160015 420 ntBASIC9.68□□□□□ -0.86
Retrieved 100 of 76,532 protein–RNA pairs in 61.5 ms