Protein–RNA interactions for Protein: Q9R1N9

Col13a1, Collagen alpha-1(XIII) chain, mousemouse

Predictions only

Length 751 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col13a1Q9R1N9 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col13a1Q9R1N9 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col13a1Q9R1N9 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col13a1Q9R1N9 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col13a1Q9R1N9 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC15.37■□□□□ 0.05
Col13a1Q9R1N9 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC15.37■□□□□ 0.05
Col13a1Q9R1N9 Arhgef4-208ENSMUST00000211073 171 ntBASIC15.37■□□□□ 0.05
Col13a1Q9R1N9 AC175538.1-201ENSMUST00000225343 1269 ntBASIC15.37■□□□□ 0.05
Col13a1Q9R1N9 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col13a1Q9R1N9 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col13a1Q9R1N9 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col13a1Q9R1N9 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col13a1Q9R1N9 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col13a1Q9R1N9 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
Col13a1Q9R1N9 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
Col13a1Q9R1N9 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Col13a1Q9R1N9 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col13a1Q9R1N9 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col13a1Q9R1N9 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col13a1Q9R1N9 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC15.36■□□□□ 0.05
Col13a1Q9R1N9 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col13a1Q9R1N9 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col13a1Q9R1N9 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col13a1Q9R1N9 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Col13a1Q9R1N9 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Col13a1Q9R1N9 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC15.36■□□□□ 0.05
Col13a1Q9R1N9 Gm11539-201ENSMUST00000119837 557 ntBASIC15.36■□□□□ 0.05
Col13a1Q9R1N9 Gm13436-201ENSMUST00000120418 567 ntBASIC15.36■□□□□ 0.05
Col13a1Q9R1N9 Gm13559-201ENSMUST00000120476 863 ntBASIC15.36■□□□□ 0.05
Col13a1Q9R1N9 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Col13a1Q9R1N9 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC15.36■□□□□ 0.05
Col13a1Q9R1N9 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
Col13a1Q9R1N9 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col13a1Q9R1N9 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Col13a1Q9R1N9 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Col13a1Q9R1N9 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col13a1Q9R1N9 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col13a1Q9R1N9 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col13a1Q9R1N9 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
Col13a1Q9R1N9 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col13a1Q9R1N9 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col13a1Q9R1N9 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col13a1Q9R1N9 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC15.35■□□□□ 0.05
Col13a1Q9R1N9 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col13a1Q9R1N9 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Col13a1Q9R1N9 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC15.35■□□□□ 0.05
Col13a1Q9R1N9 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
Col13a1Q9R1N9 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Col13a1Q9R1N9 Gm7889-201ENSMUST00000185591 958 ntBASIC15.35■□□□□ 0.05
Col13a1Q9R1N9 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC15.35■□□□□ 0.05
Col13a1Q9R1N9 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col13a1Q9R1N9 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col13a1Q9R1N9 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col13a1Q9R1N9 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col13a1Q9R1N9 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col13a1Q9R1N9 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col13a1Q9R1N9 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col13a1Q9R1N9 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col13a1Q9R1N9 Gm43672-201ENSMUST00000199072 1731 ntBASIC15.34■□□□□ 0.05
Col13a1Q9R1N9 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Col13a1Q9R1N9 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col13a1Q9R1N9 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
Col13a1Q9R1N9 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col13a1Q9R1N9 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col13a1Q9R1N9 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col13a1Q9R1N9 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC15.34■□□□□ 0.05
Col13a1Q9R1N9 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col13a1Q9R1N9 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col13a1Q9R1N9 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col13a1Q9R1N9 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
Col13a1Q9R1N9 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Col13a1Q9R1N9 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Col13a1Q9R1N9 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC15.33■□□□□ 0.05
Col13a1Q9R1N9 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Col13a1Q9R1N9 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col13a1Q9R1N9 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col13a1Q9R1N9 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC15.33■□□□□ 0.04
Col13a1Q9R1N9 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
Col13a1Q9R1N9 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Col13a1Q9R1N9 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col13a1Q9R1N9 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col13a1Q9R1N9 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC15.33■□□□□ 0.04
Col13a1Q9R1N9 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col13a1Q9R1N9 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC15.33■□□□□ 0.04
Col13a1Q9R1N9 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col13a1Q9R1N9 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC15.33■□□□□ 0.04
Col13a1Q9R1N9 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col13a1Q9R1N9 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Col13a1Q9R1N9 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Col13a1Q9R1N9 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Col13a1Q9R1N9 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col13a1Q9R1N9 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Col13a1Q9R1N9 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Col13a1Q9R1N9 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col13a1Q9R1N9 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col13a1Q9R1N9 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col13a1Q9R1N9 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col13a1Q9R1N9 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Col13a1Q9R1N9 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col13a1Q9R1N9 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 40.5 ms