Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Scn11aQ9R053 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC21.66■■□□□ 1.06
Scn11aQ9R053 AC166341.7-201ENSMUST00000221698 126 ntBASIC21.66■■□□□ 1.06
Scn11aQ9R053 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Scn11aQ9R053 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Scn11aQ9R053 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Scn11aQ9R053 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC21.66■■□□□ 1.06
Scn11aQ9R053 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Scn11aQ9R053 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Scn11aQ9R053 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Scn11aQ9R053 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Scn11aQ9R053 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Scn11aQ9R053 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Scn11aQ9R053 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Scn11aQ9R053 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Scn11aQ9R053 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC21.65■■□□□ 1.06
Scn11aQ9R053 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
Scn11aQ9R053 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Scn11aQ9R053 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
Scn11aQ9R053 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Scn11aQ9R053 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Scn11aQ9R053 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
Scn11aQ9R053 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.06
Scn11aQ9R053 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC21.64■■□□□ 1.06
Scn11aQ9R053 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Scn11aQ9R053 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
Scn11aQ9R053 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
Scn11aQ9R053 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC21.64■■□□□ 1.05
Scn11aQ9R053 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Scn11aQ9R053 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Scn11aQ9R053 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Scn11aQ9R053 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Scn11aQ9R053 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC21.63■■□□□ 1.05
Scn11aQ9R053 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
Scn11aQ9R053 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
Scn11aQ9R053 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Scn11aQ9R053 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC21.63■■□□□ 1.05
Scn11aQ9R053 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC21.63■■□□□ 1.05
Scn11aQ9R053 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC21.63■■□□□ 1.05
Scn11aQ9R053 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Scn11aQ9R053 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
Scn11aQ9R053 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Scn11aQ9R053 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Scn11aQ9R053 AC156016.1-201ENSMUST00000227190 1035 ntBASIC21.62■■□□□ 1.05
Scn11aQ9R053 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Scn11aQ9R053 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Scn11aQ9R053 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Scn11aQ9R053 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Scn11aQ9R053 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Scn11aQ9R053 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Scn11aQ9R053 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Scn11aQ9R053 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC21.61■■□□□ 1.05
Scn11aQ9R053 Gm13401-201ENSMUST00000117074 291 ntBASIC21.61■■□□□ 1.05
Scn11aQ9R053 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC21.61■■□□□ 1.05
Scn11aQ9R053 Gm11539-201ENSMUST00000119837 557 ntBASIC21.61■■□□□ 1.05
Scn11aQ9R053 Gm13436-201ENSMUST00000120418 567 ntBASIC21.61■■□□□ 1.05
Scn11aQ9R053 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC21.61■■□□□ 1.05
Scn11aQ9R053 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC21.61■■□□□ 1.05
Scn11aQ9R053 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Scn11aQ9R053 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC21.61■■□□□ 1.05
Scn11aQ9R053 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Scn11aQ9R053 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Scn11aQ9R053 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Scn11aQ9R053 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Scn11aQ9R053 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Scn11aQ9R053 Gm30025-201ENSMUST00000218555 728 ntBASIC21.61■■□□□ 1.05
Scn11aQ9R053 Gm37820-201ENSMUST00000194021 2147 ntBASIC21.61■■□□□ 1.05
Scn11aQ9R053 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Scn11aQ9R053 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC21.6■■□□□ 1.05
Scn11aQ9R053 Notumos-201ENSMUST00000151998 2659 ntBASIC21.6■■□□□ 1.05
Scn11aQ9R053 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC21.6■■□□□ 1.05
Scn11aQ9R053 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC21.6■■□□□ 1.05
Scn11aQ9R053 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Scn11aQ9R053 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Scn11aQ9R053 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Scn11aQ9R053 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Scn11aQ9R053 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Scn11aQ9R053 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Scn11aQ9R053 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
Scn11aQ9R053 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Scn11aQ9R053 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Scn11aQ9R053 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
Scn11aQ9R053 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC21.59■■□□□ 1.05
Scn11aQ9R053 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
Scn11aQ9R053 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Scn11aQ9R053 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Scn11aQ9R053 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Scn11aQ9R053 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Scn11aQ9R053 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
Scn11aQ9R053 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Scn11aQ9R053 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
Scn11aQ9R053 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Scn11aQ9R053 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Scn11aQ9R053 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Scn11aQ9R053 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
Scn11aQ9R053 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Scn11aQ9R053 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
Scn11aQ9R053 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Scn11aQ9R053 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
Scn11aQ9R053 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC21.57■■□□□ 1.04
Retrieved 100 of 76,532 protein–RNA pairs in 20.8 ms