Protein–RNA interactions for Protein: Q9QZR9

Col4a4, Collagen alpha-4(IV) chain, mousemouse

Predictions only

Length 1,682 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a4Q9QZR9 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Col4a4Q9QZR9 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col4a4Q9QZR9 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Col4a4Q9QZR9 AC108858.1-201ENSMUST00000228461 1498 ntBASIC18.35■□□□□ 0.53
Col4a4Q9QZR9 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col4a4Q9QZR9 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col4a4Q9QZR9 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Col4a4Q9QZR9 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col4a4Q9QZR9 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC18.34■□□□□ 0.53
Col4a4Q9QZR9 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Col4a4Q9QZR9 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Col4a4Q9QZR9 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC18.34■□□□□ 0.53
Col4a4Q9QZR9 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC18.34■□□□□ 0.53
Col4a4Q9QZR9 Otx2os1-206ENSMUST00000228153 787 ntBASIC18.34■□□□□ 0.53
Col4a4Q9QZR9 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col4a4Q9QZR9 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col4a4Q9QZR9 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Col4a4Q9QZR9 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Col4a4Q9QZR9 Spsb2-203ENSMUST00000112473 1322 ntBASIC18.34■□□□□ 0.53
Col4a4Q9QZR9 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Col4a4Q9QZR9 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col4a4Q9QZR9 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Col4a4Q9QZR9 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC18.34■□□□□ 0.53
Col4a4Q9QZR9 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col4a4Q9QZR9 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col4a4Q9QZR9 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Col4a4Q9QZR9 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Col4a4Q9QZR9 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col4a4Q9QZR9 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Col4a4Q9QZR9 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Col4a4Q9QZR9 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
Col4a4Q9QZR9 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Col4a4Q9QZR9 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col4a4Q9QZR9 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col4a4Q9QZR9 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
Col4a4Q9QZR9 Mir3081-201ENSMUST00000175305 84 ntBASIC18.33■□□□□ 0.52
Col4a4Q9QZR9 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC18.33■□□□□ 0.52
Col4a4Q9QZR9 Gm18115-201ENSMUST00000221209 621 ntBASIC18.33■□□□□ 0.52
Col4a4Q9QZR9 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Col4a4Q9QZR9 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col4a4Q9QZR9 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col4a4Q9QZR9 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
Col4a4Q9QZR9 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col4a4Q9QZR9 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col4a4Q9QZR9 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Col4a4Q9QZR9 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col4a4Q9QZR9 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col4a4Q9QZR9 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Col4a4Q9QZR9 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col4a4Q9QZR9 Gm7638-201ENSMUST00000121348 967 ntBASIC18.31■□□□□ 0.52
Col4a4Q9QZR9 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC18.31■□□□□ 0.52
Col4a4Q9QZR9 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col4a4Q9QZR9 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC18.31■□□□□ 0.52
Col4a4Q9QZR9 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC18.31■□□□□ 0.52
Col4a4Q9QZR9 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Col4a4Q9QZR9 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col4a4Q9QZR9 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Col4a4Q9QZR9 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
Col4a4Q9QZR9 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Col4a4Q9QZR9 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col4a4Q9QZR9 Gm9694-201ENSMUST00000193347 1189 ntBASIC18.31■□□□□ 0.52
Col4a4Q9QZR9 Gm43514-201ENSMUST00000198852 424 ntBASIC18.31■□□□□ 0.52
Col4a4Q9QZR9 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col4a4Q9QZR9 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col4a4Q9QZR9 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col4a4Q9QZR9 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col4a4Q9QZR9 Gm9731-201ENSMUST00000209480 747 ntBASIC18.3■□□□□ 0.52
Col4a4Q9QZR9 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col4a4Q9QZR9 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col4a4Q9QZR9 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Col4a4Q9QZR9 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col4a4Q9QZR9 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
Col4a4Q9QZR9 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col4a4Q9QZR9 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col4a4Q9QZR9 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Col4a4Q9QZR9 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Col4a4Q9QZR9 Gm7213-201ENSMUST00000215977 950 ntBASIC18.29■□□□□ 0.52
Col4a4Q9QZR9 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col4a4Q9QZR9 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col4a4Q9QZR9 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC18.29■□□□□ 0.52
Col4a4Q9QZR9 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Col4a4Q9QZR9 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Col4a4Q9QZR9 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Col4a4Q9QZR9 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC18.28■□□□□ 0.52
Col4a4Q9QZR9 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC18.28■□□□□ 0.52
Col4a4Q9QZR9 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Col4a4Q9QZR9 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col4a4Q9QZR9 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Col4a4Q9QZR9 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Col4a4Q9QZR9 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Col4a4Q9QZR9 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col4a4Q9QZR9 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Col4a4Q9QZR9 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col4a4Q9QZR9 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
Col4a4Q9QZR9 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col4a4Q9QZR9 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col4a4Q9QZR9 Gm11860-201ENSMUST00000122346 1010 ntBASIC18.28■□□□□ 0.52
Col4a4Q9QZR9 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Col4a4Q9QZR9 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col4a4Q9QZR9 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 39.3 ms