Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ddx56Q9D0R4 Fst-202ENSMUST00000223640 2612 ntBASIC19.05■□□□□ 0.64
Ddx56Q9D0R4 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC19.05■□□□□ 0.64
Ddx56Q9D0R4 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ddx56Q9D0R4 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ddx56Q9D0R4 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC19.05■□□□□ 0.64
Ddx56Q9D0R4 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ddx56Q9D0R4 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ddx56Q9D0R4 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC19.04■□□□□ 0.64
Ddx56Q9D0R4 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC19.04■□□□□ 0.64
Ddx56Q9D0R4 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ddx56Q9D0R4 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
Ddx56Q9D0R4 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ddx56Q9D0R4 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC19.04■□□□□ 0.64
Ddx56Q9D0R4 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ddx56Q9D0R4 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ddx56Q9D0R4 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ddx56Q9D0R4 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ddx56Q9D0R4 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ddx56Q9D0R4 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ddx56Q9D0R4 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ddx56Q9D0R4 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ddx56Q9D0R4 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC19.03■□□□□ 0.64
Ddx56Q9D0R4 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ddx56Q9D0R4 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
Ddx56Q9D0R4 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC19.03■□□□□ 0.64
Ddx56Q9D0R4 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
Ddx56Q9D0R4 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC19.03■□□□□ 0.64
Ddx56Q9D0R4 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC19.03■□□□□ 0.64
Ddx56Q9D0R4 AC140264.2-202ENSMUST00000218746 817 ntBASIC19.03■□□□□ 0.64
Ddx56Q9D0R4 AC164629.5-201ENSMUST00000220387 632 ntBASIC19.03■□□□□ 0.64
Ddx56Q9D0R4 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ddx56Q9D0R4 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ddx56Q9D0R4 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
Ddx56Q9D0R4 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
Ddx56Q9D0R4 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Ddx56Q9D0R4 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Ddx56Q9D0R4 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Ddx56Q9D0R4 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Ddx56Q9D0R4 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Ddx56Q9D0R4 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Ddx56Q9D0R4 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Ddx56Q9D0R4 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC19.02■□□□□ 0.63
Ddx56Q9D0R4 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.63
Ddx56Q9D0R4 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC19.02■□□□□ 0.63
Ddx56Q9D0R4 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
Ddx56Q9D0R4 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
Ddx56Q9D0R4 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC19.01■□□□□ 0.63
Ddx56Q9D0R4 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ddx56Q9D0R4 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ddx56Q9D0R4 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ddx56Q9D0R4 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ddx56Q9D0R4 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ddx56Q9D0R4 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Ddx56Q9D0R4 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC19.01■□□□□ 0.63
Ddx56Q9D0R4 Gm26524-201ENSMUST00000192339 390 ntBASIC19.01■□□□□ 0.63
Ddx56Q9D0R4 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC19.01■□□□□ 0.63
Ddx56Q9D0R4 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ddx56Q9D0R4 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC19.01■□□□□ 0.63
Ddx56Q9D0R4 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC19.01■□□□□ 0.63
Ddx56Q9D0R4 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
Ddx56Q9D0R4 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
Ddx56Q9D0R4 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC19■□□□□ 0.63
Ddx56Q9D0R4 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
Ddx56Q9D0R4 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC19■□□□□ 0.63
Ddx56Q9D0R4 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC19■□□□□ 0.63
Ddx56Q9D0R4 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC19■□□□□ 0.63
Ddx56Q9D0R4 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC19■□□□□ 0.63
Ddx56Q9D0R4 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Ddx56Q9D0R4 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Ddx56Q9D0R4 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Ddx56Q9D0R4 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC19■□□□□ 0.63
Ddx56Q9D0R4 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Ddx56Q9D0R4 Gm43182-201ENSMUST00000199476 2528 ntBASIC19■□□□□ 0.63
Ddx56Q9D0R4 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Ddx56Q9D0R4 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
Ddx56Q9D0R4 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Ddx56Q9D0R4 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ddx56Q9D0R4 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ddx56Q9D0R4 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ddx56Q9D0R4 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Ddx56Q9D0R4 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ddx56Q9D0R4 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC18.99■□□□□ 0.63
Ddx56Q9D0R4 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ddx56Q9D0R4 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
Ddx56Q9D0R4 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ddx56Q9D0R4 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Ddx56Q9D0R4 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Ddx56Q9D0R4 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC18.99■□□□□ 0.63
Ddx56Q9D0R4 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC18.99■□□□□ 0.63
Ddx56Q9D0R4 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
Ddx56Q9D0R4 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
Ddx56Q9D0R4 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ddx56Q9D0R4 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
Ddx56Q9D0R4 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ddx56Q9D0R4 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ddx56Q9D0R4 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Ddx56Q9D0R4 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ddx56Q9D0R4 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ddx56Q9D0R4 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 38.1 ms