Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC20.22■□□□□ 0.83
Smc1aQ9CU62 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Smc1aQ9CU62 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Smc1aQ9CU62 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC20.22■□□□□ 0.83
Smc1aQ9CU62 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Smc1aQ9CU62 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC20.22■□□□□ 0.83
Smc1aQ9CU62 Gm20049-201ENSMUST00000219950 730 ntBASIC20.22■□□□□ 0.83
Smc1aQ9CU62 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Smc1aQ9CU62 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Smc1aQ9CU62 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Smc1aQ9CU62 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC20.22■□□□□ 0.83
Smc1aQ9CU62 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Smc1aQ9CU62 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Smc1aQ9CU62 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Smc1aQ9CU62 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Smc1aQ9CU62 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Smc1aQ9CU62 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Smc1aQ9CU62 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC20.21■□□□□ 0.83
Smc1aQ9CU62 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Smc1aQ9CU62 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC20.21■□□□□ 0.83
Smc1aQ9CU62 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Smc1aQ9CU62 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Smc1aQ9CU62 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Smc1aQ9CU62 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Smc1aQ9CU62 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Smc1aQ9CU62 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Smc1aQ9CU62 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Smc1aQ9CU62 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Smc1aQ9CU62 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC20.2■□□□□ 0.82
Smc1aQ9CU62 Gm13168-201ENSMUST00000121771 632 ntBASIC20.2■□□□□ 0.82
Smc1aQ9CU62 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Smc1aQ9CU62 AC124603.1-201ENSMUST00000223843 308 ntBASIC20.2■□□□□ 0.82
Smc1aQ9CU62 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Smc1aQ9CU62 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
Smc1aQ9CU62 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Smc1aQ9CU62 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Smc1aQ9CU62 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Smc1aQ9CU62 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Smc1aQ9CU62 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Smc1aQ9CU62 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Smc1aQ9CU62 Gm43702-201ENSMUST00000198772 2546 ntBASIC20.19■□□□□ 0.82
Smc1aQ9CU62 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
Smc1aQ9CU62 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
Smc1aQ9CU62 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Smc1aQ9CU62 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
Smc1aQ9CU62 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Smc1aQ9CU62 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC20.19■□□□□ 0.82
Smc1aQ9CU62 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Smc1aQ9CU62 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Smc1aQ9CU62 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Smc1aQ9CU62 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Smc1aQ9CU62 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Smc1aQ9CU62 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Smc1aQ9CU62 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Smc1aQ9CU62 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Smc1aQ9CU62 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Smc1aQ9CU62 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Smc1aQ9CU62 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Smc1aQ9CU62 AC135637.1-201ENSMUST00000227750 365 ntBASIC20.18■□□□□ 0.82
Smc1aQ9CU62 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Smc1aQ9CU62 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC20.18■□□□□ 0.82
Smc1aQ9CU62 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Smc1aQ9CU62 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Smc1aQ9CU62 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Smc1aQ9CU62 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Smc1aQ9CU62 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Smc1aQ9CU62 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Smc1aQ9CU62 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC20.17■□□□□ 0.82
Smc1aQ9CU62 Gm10252-201ENSMUST00000209541 832 ntBASIC20.17■□□□□ 0.82
Smc1aQ9CU62 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC20.17■□□□□ 0.82
Smc1aQ9CU62 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Smc1aQ9CU62 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Smc1aQ9CU62 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC20.17■□□□□ 0.82
Smc1aQ9CU62 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Smc1aQ9CU62 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Smc1aQ9CU62 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Smc1aQ9CU62 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Smc1aQ9CU62 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC20.16■□□□□ 0.82
Smc1aQ9CU62 AC122769.4-201ENSMUST00000228166 901 ntBASIC20.16■□□□□ 0.82
Smc1aQ9CU62 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Smc1aQ9CU62 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Smc1aQ9CU62 Gm43548-201ENSMUST00000197139 2353 ntBASIC20.16■□□□□ 0.82
Smc1aQ9CU62 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Smc1aQ9CU62 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Smc1aQ9CU62 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Smc1aQ9CU62 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Smc1aQ9CU62 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Smc1aQ9CU62 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Smc1aQ9CU62 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Smc1aQ9CU62 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC20.15■□□□□ 0.82
Smc1aQ9CU62 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Smc1aQ9CU62 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC20.15■□□□□ 0.82
Smc1aQ9CU62 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC20.15■□□□□ 0.82
Smc1aQ9CU62 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.15■□□□□ 0.82
Smc1aQ9CU62 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC20.15■□□□□ 0.82
Smc1aQ9CU62 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Smc1aQ9CU62 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Smc1aQ9CU62 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC20.15■□□□□ 0.82
Smc1aQ9CU62 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC20.15■□□□□ 0.82
Smc1aQ9CU62 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 21.3 ms