Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC20.32■□□□□ 0.84
Ushbp1Q8R370 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
Ushbp1Q8R370 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ushbp1Q8R370 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Ushbp1Q8R370 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ushbp1Q8R370 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Ushbp1Q8R370 AC121961.1-201ENSMUST00000218594 1779 ntBASIC20.31■□□□□ 0.84
Ushbp1Q8R370 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC20.31■□□□□ 0.84
Ushbp1Q8R370 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Ushbp1Q8R370 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Ushbp1Q8R370 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Ushbp1Q8R370 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Ushbp1Q8R370 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC20.31■□□□□ 0.84
Ushbp1Q8R370 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Ushbp1Q8R370 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC20.31■□□□□ 0.84
Ushbp1Q8R370 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC20.31■□□□□ 0.84
Ushbp1Q8R370 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Ushbp1Q8R370 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Ushbp1Q8R370 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Ushbp1Q8R370 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Ushbp1Q8R370 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Ushbp1Q8R370 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Ushbp1Q8R370 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Ushbp1Q8R370 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Ushbp1Q8R370 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC20.3■□□□□ 0.84
Ushbp1Q8R370 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Ushbp1Q8R370 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC20.29■□□□□ 0.84
Ushbp1Q8R370 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ushbp1Q8R370 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ushbp1Q8R370 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
Ushbp1Q8R370 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ushbp1Q8R370 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC20.29■□□□□ 0.84
Ushbp1Q8R370 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ushbp1Q8R370 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Ushbp1Q8R370 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Ushbp1Q8R370 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Ushbp1Q8R370 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ushbp1Q8R370 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ushbp1Q8R370 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ushbp1Q8R370 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ushbp1Q8R370 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ushbp1Q8R370 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ushbp1Q8R370 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ushbp1Q8R370 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ushbp1Q8R370 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ushbp1Q8R370 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ushbp1Q8R370 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ushbp1Q8R370 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC20.28■□□□□ 0.84
Ushbp1Q8R370 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ushbp1Q8R370 Gm43672-201ENSMUST00000199072 1731 ntBASIC20.28■□□□□ 0.84
Ushbp1Q8R370 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Ushbp1Q8R370 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC20.28■□□□□ 0.84
Ushbp1Q8R370 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ushbp1Q8R370 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ushbp1Q8R370 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Ushbp1Q8R370 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Ushbp1Q8R370 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC20.28■□□□□ 0.84
Ushbp1Q8R370 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC20.28■□□□□ 0.84
Ushbp1Q8R370 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Ushbp1Q8R370 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ushbp1Q8R370 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Ushbp1Q8R370 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ushbp1Q8R370 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ushbp1Q8R370 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ushbp1Q8R370 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ushbp1Q8R370 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC20.27■□□□□ 0.84
Ushbp1Q8R370 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ushbp1Q8R370 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ushbp1Q8R370 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ushbp1Q8R370 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC20.27■□□□□ 0.84
Ushbp1Q8R370 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Ushbp1Q8R370 Gm26524-201ENSMUST00000192339 390 ntBASIC20.27■□□□□ 0.84
Ushbp1Q8R370 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
Ushbp1Q8R370 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ushbp1Q8R370 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ushbp1Q8R370 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ushbp1Q8R370 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC20.27■□□□□ 0.84
Ushbp1Q8R370 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ushbp1Q8R370 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ushbp1Q8R370 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ushbp1Q8R370 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ushbp1Q8R370 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ushbp1Q8R370 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ushbp1Q8R370 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Ushbp1Q8R370 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC20.26■□□□□ 0.83
Ushbp1Q8R370 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC20.26■□□□□ 0.83
Ushbp1Q8R370 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC20.26■□□□□ 0.83
Ushbp1Q8R370 AC135963.1-201ENSMUST00000211640 717 ntBASIC20.26■□□□□ 0.83
Ushbp1Q8R370 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ushbp1Q8R370 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ushbp1Q8R370 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ushbp1Q8R370 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ushbp1Q8R370 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC20.25■□□□□ 0.83
Ushbp1Q8R370 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Ushbp1Q8R370 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC20.25■□□□□ 0.83
Ushbp1Q8R370 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Ushbp1Q8R370 Rab3c-203ENSMUST00000224180 967 ntBASIC20.25■□□□□ 0.83
Ushbp1Q8R370 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ushbp1Q8R370 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ushbp1Q8R370 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 11.2 ms