Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Syne4Q8CII8 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
Syne4Q8CII8 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Syne4Q8CII8 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Syne4Q8CII8 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Syne4Q8CII8 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
Syne4Q8CII8 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC20.58■□□□□ 0.89
Syne4Q8CII8 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Syne4Q8CII8 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Syne4Q8CII8 Mir2861-201ENSMUST00000175539 82 ntBASIC20.58■□□□□ 0.89
Syne4Q8CII8 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Syne4Q8CII8 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
Syne4Q8CII8 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Syne4Q8CII8 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Syne4Q8CII8 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Syne4Q8CII8 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Syne4Q8CII8 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC20.57■□□□□ 0.88
Syne4Q8CII8 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Syne4Q8CII8 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Syne4Q8CII8 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC20.57■□□□□ 0.88
Syne4Q8CII8 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC20.57■□□□□ 0.88
Syne4Q8CII8 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
Syne4Q8CII8 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Syne4Q8CII8 Gm38027-201ENSMUST00000192315 235 ntBASIC20.57■□□□□ 0.88
Syne4Q8CII8 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Syne4Q8CII8 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC20.57■□□□□ 0.88
Syne4Q8CII8 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Syne4Q8CII8 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Syne4Q8CII8 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Syne4Q8CII8 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Syne4Q8CII8 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Syne4Q8CII8 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Syne4Q8CII8 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
Syne4Q8CII8 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
Syne4Q8CII8 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Syne4Q8CII8 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC20.56■□□□□ 0.88
Syne4Q8CII8 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Syne4Q8CII8 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
Syne4Q8CII8 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Syne4Q8CII8 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC20.56■□□□□ 0.88
Syne4Q8CII8 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Syne4Q8CII8 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Syne4Q8CII8 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Syne4Q8CII8 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Syne4Q8CII8 Gm14859-201ENSMUST00000117752 357 ntBASIC20.55■□□□□ 0.88
Syne4Q8CII8 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Syne4Q8CII8 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Syne4Q8CII8 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Syne4Q8CII8 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Syne4Q8CII8 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Syne4Q8CII8 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Syne4Q8CII8 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Syne4Q8CII8 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Syne4Q8CII8 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC20.54■□□□□ 0.88
Syne4Q8CII8 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Syne4Q8CII8 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC20.54■□□□□ 0.88
Syne4Q8CII8 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Syne4Q8CII8 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Syne4Q8CII8 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Syne4Q8CII8 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Syne4Q8CII8 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Syne4Q8CII8 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Syne4Q8CII8 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Syne4Q8CII8 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Syne4Q8CII8 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
Syne4Q8CII8 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC20.53■□□□□ 0.88
Syne4Q8CII8 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
Syne4Q8CII8 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Syne4Q8CII8 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Syne4Q8CII8 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
Syne4Q8CII8 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Syne4Q8CII8 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Syne4Q8CII8 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC20.53■□□□□ 0.88
Syne4Q8CII8 Gm22697-201ENSMUST00000175194 63 ntBASIC20.53■□□□□ 0.88
Syne4Q8CII8 Gm9694-201ENSMUST00000193347 1189 ntBASIC20.53■□□□□ 0.88
Syne4Q8CII8 Gm18101-201ENSMUST00000215769 548 ntBASIC20.53■□□□□ 0.88
Syne4Q8CII8 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC20.53■□□□□ 0.88
Syne4Q8CII8 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
Syne4Q8CII8 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Syne4Q8CII8 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Syne4Q8CII8 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Syne4Q8CII8 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Syne4Q8CII8 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Syne4Q8CII8 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Syne4Q8CII8 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Syne4Q8CII8 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Syne4Q8CII8 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Syne4Q8CII8 Gm9103-201ENSMUST00000119371 405 ntBASIC20.52■□□□□ 0.88
Syne4Q8CII8 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Syne4Q8CII8 Ank2-226ENSMUST00000189368 339 ntBASIC20.52■□□□□ 0.88
Syne4Q8CII8 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Syne4Q8CII8 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
Syne4Q8CII8 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Syne4Q8CII8 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.87
Syne4Q8CII8 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Syne4Q8CII8 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC20.51■□□□□ 0.87
Syne4Q8CII8 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Syne4Q8CII8 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Syne4Q8CII8 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Syne4Q8CII8 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 53.5 ms