Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Vps53Q8CCB4 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC21.1■□□□□ 0.97
Vps53Q8CCB4 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC21.1■□□□□ 0.97
Vps53Q8CCB4 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Vps53Q8CCB4 Mir7071-201ENSMUST00000184847 69 ntBASIC21.1■□□□□ 0.97
Vps53Q8CCB4 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Vps53Q8CCB4 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
Vps53Q8CCB4 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
Vps53Q8CCB4 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Vps53Q8CCB4 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Vps53Q8CCB4 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Vps53Q8CCB4 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC21.09■□□□□ 0.97
Vps53Q8CCB4 Gm10461-201ENSMUST00000202073 4786 ntBASIC21.09■□□□□ 0.97
Vps53Q8CCB4 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Vps53Q8CCB4 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC21.09■□□□□ 0.97
Vps53Q8CCB4 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC21.09■□□□□ 0.97
Vps53Q8CCB4 Gm44672-201ENSMUST00000206944 1098 ntBASIC21.09■□□□□ 0.97
Vps53Q8CCB4 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC21.09■□□□□ 0.97
Vps53Q8CCB4 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Vps53Q8CCB4 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC21.09■□□□□ 0.97
Vps53Q8CCB4 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Vps53Q8CCB4 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Vps53Q8CCB4 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
Vps53Q8CCB4 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Vps53Q8CCB4 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Vps53Q8CCB4 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Vps53Q8CCB4 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Vps53Q8CCB4 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Vps53Q8CCB4 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Vps53Q8CCB4 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Vps53Q8CCB4 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Vps53Q8CCB4 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Vps53Q8CCB4 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.96
Vps53Q8CCB4 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Vps53Q8CCB4 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Vps53Q8CCB4 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Vps53Q8CCB4 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Vps53Q8CCB4 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC21.07■□□□□ 0.96
Vps53Q8CCB4 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Vps53Q8CCB4 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Vps53Q8CCB4 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Vps53Q8CCB4 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Vps53Q8CCB4 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
Vps53Q8CCB4 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Vps53Q8CCB4 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Vps53Q8CCB4 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Vps53Q8CCB4 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Vps53Q8CCB4 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Vps53Q8CCB4 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Vps53Q8CCB4 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Vps53Q8CCB4 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
Vps53Q8CCB4 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Vps53Q8CCB4 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Vps53Q8CCB4 Gm26524-201ENSMUST00000192339 390 ntBASIC21.06■□□□□ 0.96
Vps53Q8CCB4 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Vps53Q8CCB4 Rab3c-203ENSMUST00000224180 967 ntBASIC21.06■□□□□ 0.96
Vps53Q8CCB4 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Vps53Q8CCB4 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
Vps53Q8CCB4 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Vps53Q8CCB4 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC21.06■□□□□ 0.96
Vps53Q8CCB4 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Vps53Q8CCB4 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
Vps53Q8CCB4 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Vps53Q8CCB4 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC21.05■□□□□ 0.96
Vps53Q8CCB4 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC21.05■□□□□ 0.96
Vps53Q8CCB4 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Vps53Q8CCB4 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC21.05■□□□□ 0.96
Vps53Q8CCB4 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC21.05■□□□□ 0.96
Vps53Q8CCB4 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Vps53Q8CCB4 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Vps53Q8CCB4 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Vps53Q8CCB4 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Vps53Q8CCB4 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Vps53Q8CCB4 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Vps53Q8CCB4 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Vps53Q8CCB4 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Vps53Q8CCB4 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Vps53Q8CCB4 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
Vps53Q8CCB4 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC21.04■□□□□ 0.96
Vps53Q8CCB4 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC21.04■□□□□ 0.96
Vps53Q8CCB4 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Vps53Q8CCB4 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Vps53Q8CCB4 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Vps53Q8CCB4 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Vps53Q8CCB4 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Vps53Q8CCB4 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Vps53Q8CCB4 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
Vps53Q8CCB4 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC21.03■□□□□ 0.96
Vps53Q8CCB4 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
Vps53Q8CCB4 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Vps53Q8CCB4 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
Vps53Q8CCB4 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Vps53Q8CCB4 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Vps53Q8CCB4 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Vps53Q8CCB4 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Vps53Q8CCB4 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Vps53Q8CCB4 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Vps53Q8CCB4 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Vps53Q8CCB4 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Vps53Q8CCB4 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 23.7 ms