Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC25.69■■□□□ 1.7
Usp47Q8BY87 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC25.69■■□□□ 1.7
Usp47Q8BY87 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Usp47Q8BY87 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC25.68■■□□□ 1.7
Usp47Q8BY87 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Usp47Q8BY87 Gm35558-201ENSMUST00000222675 2219 ntBASIC25.68■■□□□ 1.7
Usp47Q8BY87 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Usp47Q8BY87 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Usp47Q8BY87 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC25.68■■□□□ 1.7
Usp47Q8BY87 Gm37292-201ENSMUST00000192062 758 ntBASIC25.68■■□□□ 1.7
Usp47Q8BY87 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC25.67■■□□□ 1.7
Usp47Q8BY87 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Usp47Q8BY87 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Usp47Q8BY87 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Usp47Q8BY87 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC25.67■■□□□ 1.7
Usp47Q8BY87 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Usp47Q8BY87 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
Usp47Q8BY87 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC25.67■■□□□ 1.7
Usp47Q8BY87 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
Usp47Q8BY87 Mir1199-201ENSMUST00000117015 119 ntBASIC25.67■■□□□ 1.7
Usp47Q8BY87 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC25.67■■□□□ 1.7
Usp47Q8BY87 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC25.67■■□□□ 1.7
Usp47Q8BY87 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC25.67■■□□□ 1.7
Usp47Q8BY87 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Usp47Q8BY87 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
Usp47Q8BY87 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Usp47Q8BY87 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Usp47Q8BY87 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Usp47Q8BY87 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Usp47Q8BY87 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
Usp47Q8BY87 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
Usp47Q8BY87 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC25.66■■□□□ 1.7
Usp47Q8BY87 Gm43183-201ENSMUST00000200632 547 ntBASIC25.66■■□□□ 1.7
Usp47Q8BY87 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC25.66■■□□□ 1.7
Usp47Q8BY87 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC25.66■■□□□ 1.7
Usp47Q8BY87 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Usp47Q8BY87 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC25.65■■□□□ 1.7
Usp47Q8BY87 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Usp47Q8BY87 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Usp47Q8BY87 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Usp47Q8BY87 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC25.65■■□□□ 1.7
Usp47Q8BY87 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC25.65■■□□□ 1.7
Usp47Q8BY87 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC25.65■■□□□ 1.7
Usp47Q8BY87 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC25.65■■□□□ 1.7
Usp47Q8BY87 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Usp47Q8BY87 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Usp47Q8BY87 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Usp47Q8BY87 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Usp47Q8BY87 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
Usp47Q8BY87 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
Usp47Q8BY87 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
Usp47Q8BY87 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC25.64■■□□□ 1.7
Usp47Q8BY87 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC25.64■■□□□ 1.7
Usp47Q8BY87 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
Usp47Q8BY87 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC25.64■■□□□ 1.69
Usp47Q8BY87 Arhgef33-211ENSMUST00000225658 473 ntBASIC25.64■■□□□ 1.69
Usp47Q8BY87 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC25.64■■□□□ 1.69
Usp47Q8BY87 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC25.63■■□□□ 1.69
Usp47Q8BY87 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
Usp47Q8BY87 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
Usp47Q8BY87 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC25.63■■□□□ 1.69
Usp47Q8BY87 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC25.63■■□□□ 1.69
Usp47Q8BY87 Gm29241-201ENSMUST00000189260 1096 ntBASIC25.63■■□□□ 1.69
Usp47Q8BY87 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC25.63■■□□□ 1.69
Usp47Q8BY87 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC25.63■■□□□ 1.69
Usp47Q8BY87 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
Usp47Q8BY87 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC25.63■■□□□ 1.69
Usp47Q8BY87 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
Usp47Q8BY87 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC25.62■■□□□ 1.69
Usp47Q8BY87 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC25.62■■□□□ 1.69
Usp47Q8BY87 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC25.62■■□□□ 1.69
Usp47Q8BY87 Gm715-201ENSMUST00000117865 831 ntBASIC25.62■■□□□ 1.69
Usp47Q8BY87 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC25.62■■□□□ 1.69
Usp47Q8BY87 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
Usp47Q8BY87 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
Usp47Q8BY87 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
Usp47Q8BY87 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Usp47Q8BY87 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
Usp47Q8BY87 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Usp47Q8BY87 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC25.61■■□□□ 1.69
Usp47Q8BY87 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC25.61■■□□□ 1.69
Usp47Q8BY87 Gm6576-201ENSMUST00000169678 883 ntBASIC25.61■■□□□ 1.69
Usp47Q8BY87 AC166341.7-201ENSMUST00000221698 126 ntBASIC25.61■■□□□ 1.69
Usp47Q8BY87 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Usp47Q8BY87 AC108858.1-201ENSMUST00000228461 1498 ntBASIC25.61■■□□□ 1.69
Usp47Q8BY87 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Usp47Q8BY87 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Usp47Q8BY87 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
Usp47Q8BY87 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC25.6■■□□□ 1.69
Usp47Q8BY87 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC25.6■■□□□ 1.69
Usp47Q8BY87 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Usp47Q8BY87 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC25.6■■□□□ 1.69
Usp47Q8BY87 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Usp47Q8BY87 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC25.6■■□□□ 1.69
Usp47Q8BY87 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC25.6■■□□□ 1.69
Usp47Q8BY87 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Usp47Q8BY87 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Usp47Q8BY87 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Usp47Q8BY87 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC25.6■■□□□ 1.69
Usp47Q8BY87 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC25.6■■□□□ 1.69
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms