Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Gm5186-201ENSMUST00000218781 920 ntBASIC15.19■□□□□ 0.02
Col7a1Q63870 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col7a1Q63870 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Col7a1Q63870 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col7a1Q63870 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC15.18■□□□□ 0.02
Col7a1Q63870 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC15.18■□□□□ 0.02
Col7a1Q63870 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Col7a1Q63870 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col7a1Q63870 Gm37352-201ENSMUST00000193908 2181 ntBASIC15.18■□□□□ 0.02
Col7a1Q63870 Olfr129-201ENSMUST00000122318 993 ntBASIC15.18■□□□□ 0.02
Col7a1Q63870 Gm43575-201ENSMUST00000196420 516 ntBASIC15.18■□□□□ 0.02
Col7a1Q63870 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Col7a1Q63870 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col7a1Q63870 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Col7a1Q63870 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC15.17■□□□□ 0.02
Col7a1Q63870 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col7a1Q63870 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col7a1Q63870 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col7a1Q63870 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Col7a1Q63870 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Col7a1Q63870 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Col7a1Q63870 Mir1668-201ENSMUST00000184114 107 ntBASIC15.16■□□□□ 0.02
Col7a1Q63870 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col7a1Q63870 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col7a1Q63870 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col7a1Q63870 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Col7a1Q63870 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Col7a1Q63870 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col7a1Q63870 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Col7a1Q63870 Gm23935-201ENSMUST00000102303 57 ntBASIC15.16■□□□□ 0.02
Col7a1Q63870 Gm24270-201ENSMUST00000102326 57 ntBASIC15.16■□□□□ 0.02
Col7a1Q63870 Gm24245-201ENSMUST00000157318 57 ntBASIC15.16■□□□□ 0.02
Col7a1Q63870 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col7a1Q63870 Gm3272-201ENSMUST00000181181 1229 ntBASIC15.16■□□□□ 0.02
Col7a1Q63870 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC15.16■□□□□ 0.02
Col7a1Q63870 Gm9949-201ENSMUST00000067743 962 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col7a1Q63870 Gm10566-201ENSMUST00000086739 996 ntBASIC15.16■□□□□ 0.02
Col7a1Q63870 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC15.16■□□□□ 0.02
Col7a1Q63870 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col7a1Q63870 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Col7a1Q63870 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Col7a1Q63870 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Col7a1Q63870 Gm27702-201ENSMUST00000184512 56 ntBASIC15.16■□□□□ 0.02
Col7a1Q63870 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col7a1Q63870 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
Col7a1Q63870 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col7a1Q63870 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Col7a1Q63870 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col7a1Q63870 Gm45328-201ENSMUST00000210942 917 ntBASIC15.15■□□□□ 0.02
Col7a1Q63870 CT943659.1-201ENSMUST00000215459 326 ntBASIC15.15■□□□□ 0.02
Col7a1Q63870 Gm26766-202ENSMUST00000227544 2347 ntBASIC15.15■□□□□ 0.02
Col7a1Q63870 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
Col7a1Q63870 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
Col7a1Q63870 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC15.15■□□□□ 0.02
Col7a1Q63870 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC15.15■□□□□ 0.02
Col7a1Q63870 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col7a1Q63870 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col7a1Q63870 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col7a1Q63870 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col7a1Q63870 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col7a1Q63870 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col7a1Q63870 Gm44544-201ENSMUST00000207052 1844 ntBASIC15.14■□□□□ 0.01
Col7a1Q63870 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Col7a1Q63870 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col7a1Q63870 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Col7a1Q63870 Gm10418-201ENSMUST00000100943 576 ntBASIC15.14■□□□□ 0.01
Col7a1Q63870 Gm6736-201ENSMUST00000166583 948 ntBASIC15.14■□□□□ 0.01
Col7a1Q63870 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Col7a1Q63870 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col7a1Q63870 AC159301.1-201ENSMUST00000225130 1182 ntBASIC15.14■□□□□ 0.01
Col7a1Q63870 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col7a1Q63870 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Col7a1Q63870 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC15.14■□□□□ 0.01
Col7a1Q63870 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col7a1Q63870 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col7a1Q63870 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC15.13■□□□□ 0.01
Col7a1Q63870 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Col7a1Q63870 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC15.13■□□□□ 0.01
Col7a1Q63870 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col7a1Q63870 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC15.13■□□□□ 0.01
Col7a1Q63870 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC15.13■□□□□ 0.01
Col7a1Q63870 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC15.13■□□□□ 0.01
Col7a1Q63870 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col7a1Q63870 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col7a1Q63870 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC15.13■□□□□ 0.01
Col7a1Q63870 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
Col7a1Q63870 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col7a1Q63870 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col7a1Q63870 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Col7a1Q63870 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Col7a1Q63870 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col7a1Q63870 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Col7a1Q63870 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Col7a1Q63870 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col7a1Q63870 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC15.13■□□□□ 0.01
Col7a1Q63870 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC15.13■□□□□ 0.01
Col7a1Q63870 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col7a1Q63870 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC15.13■□□□□ 0.01
Col7a1Q63870 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC15.13■□□□□ 0.01
Col7a1Q63870 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms