Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Six4Q61321 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Six4Q61321 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Six4Q61321 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC18.32■□□□□ 0.52
Six4Q61321 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC18.32■□□□□ 0.52
Six4Q61321 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC18.32■□□□□ 0.52
Six4Q61321 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Six4Q61321 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Six4Q61321 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Six4Q61321 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Six4Q61321 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Six4Q61321 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
Six4Q61321 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Six4Q61321 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Six4Q61321 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
Six4Q61321 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC18.31■□□□□ 0.52
Six4Q61321 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Six4Q61321 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Six4Q61321 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Six4Q61321 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Six4Q61321 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Six4Q61321 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Six4Q61321 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Six4Q61321 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Six4Q61321 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Six4Q61321 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Six4Q61321 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Six4Q61321 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Six4Q61321 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Six4Q61321 Gm11927-201ENSMUST00000118472 759 ntBASIC18.3■□□□□ 0.52
Six4Q61321 Gm15847-201ENSMUST00000121417 1065 ntBASIC18.3■□□□□ 0.52
Six4Q61321 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC18.3■□□□□ 0.52
Six4Q61321 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Six4Q61321 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Six4Q61321 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC18.3■□□□□ 0.52
Six4Q61321 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Six4Q61321 Zfp783-201ENSMUST00000095946 670 ntBASIC18.3■□□□□ 0.52
Six4Q61321 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC18.3■□□□□ 0.52
Six4Q61321 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Six4Q61321 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Six4Q61321 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC18.29■□□□□ 0.52
Six4Q61321 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Six4Q61321 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Six4Q61321 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Six4Q61321 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC18.29■□□□□ 0.52
Six4Q61321 Flg-201ENSMUST00000050758 1488 ntBASIC18.29■□□□□ 0.52
Six4Q61321 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Six4Q61321 Gm38285-201ENSMUST00000192928 922 ntBASIC18.29■□□□□ 0.52
Six4Q61321 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Six4Q61321 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Six4Q61321 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Six4Q61321 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Six4Q61321 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC18.28■□□□□ 0.52
Six4Q61321 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC18.28■□□□□ 0.52
Six4Q61321 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Six4Q61321 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC18.28■□□□□ 0.52
Six4Q61321 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Six4Q61321 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Six4Q61321 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Six4Q61321 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Six4Q61321 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Six4Q61321 Gm11249-201ENSMUST00000117071 859 ntBASIC18.28■□□□□ 0.52
Six4Q61321 Gm12669-201ENSMUST00000122162 1009 ntBASIC18.28■□□□□ 0.52
Six4Q61321 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC18.28■□□□□ 0.52
Six4Q61321 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC18.28■□□□□ 0.52
Six4Q61321 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Six4Q61321 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Six4Q61321 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Six4Q61321 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Six4Q61321 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Six4Q61321 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Six4Q61321 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Six4Q61321 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Six4Q61321 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Six4Q61321 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
Six4Q61321 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC18.27■□□□□ 0.52
Six4Q61321 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Six4Q61321 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
Six4Q61321 Gm37856-201ENSMUST00000191634 999 ntBASIC18.27■□□□□ 0.52
Six4Q61321 Mtag2-201ENSMUST00000058665 714 ntBASIC18.27■□□□□ 0.52
Six4Q61321 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Six4Q61321 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Six4Q61321 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
Six4Q61321 Grk6-206ENSMUST00000224995 2971 ntBASIC18.27■□□□□ 0.51
Six4Q61321 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC18.27■□□□□ 0.51
Six4Q61321 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Six4Q61321 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC18.26■□□□□ 0.51
Six4Q61321 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Six4Q61321 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Six4Q61321 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC18.26■□□□□ 0.51
Six4Q61321 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Six4Q61321 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Six4Q61321 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
Six4Q61321 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
Six4Q61321 Gm10653-202ENSMUST00000139570 835 ntBASIC18.26■□□□□ 0.51
Six4Q61321 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Six4Q61321 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC18.26■□□□□ 0.51
Six4Q61321 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Six4Q61321 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Six4Q61321 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 50.9 ms