Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Ddb1Q3U1J4 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
Ddb1Q3U1J4 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Ddb1Q3U1J4 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Ddb1Q3U1J4 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Ddb1Q3U1J4 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC23.15■■□□□ 1.3
Ddb1Q3U1J4 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Ddb1Q3U1J4 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Ddb1Q3U1J4 Gm28033-201ENSMUST00000184224 96 ntBASIC23.15■■□□□ 1.3
Ddb1Q3U1J4 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC23.15■■□□□ 1.3
Ddb1Q3U1J4 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Ddb1Q3U1J4 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
Ddb1Q3U1J4 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Ddb1Q3U1J4 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Ddb1Q3U1J4 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC23.15■■□□□ 1.3
Ddb1Q3U1J4 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC23.14■■□□□ 1.3
Ddb1Q3U1J4 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC23.14■■□□□ 1.3
Ddb1Q3U1J4 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.3
Ddb1Q3U1J4 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.29
Ddb1Q3U1J4 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.29
Ddb1Q3U1J4 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Ddb1Q3U1J4 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC23.14■■□□□ 1.29
Ddb1Q3U1J4 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Ddb1Q3U1J4 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Ddb1Q3U1J4 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC23.14■■□□□ 1.29
Ddb1Q3U1J4 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Ddb1Q3U1J4 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Ddb1Q3U1J4 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Ddb1Q3U1J4 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC23.13■■□□□ 1.29
Ddb1Q3U1J4 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
Ddb1Q3U1J4 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Ddb1Q3U1J4 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
Ddb1Q3U1J4 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Ddb1Q3U1J4 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC23.13■■□□□ 1.29
Ddb1Q3U1J4 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
Ddb1Q3U1J4 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC23.12■■□□□ 1.29
Ddb1Q3U1J4 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC23.12■■□□□ 1.29
Ddb1Q3U1J4 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
Ddb1Q3U1J4 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
Ddb1Q3U1J4 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
Ddb1Q3U1J4 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC23.12■■□□□ 1.29
Ddb1Q3U1J4 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC23.12■■□□□ 1.29
Ddb1Q3U1J4 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Ddb1Q3U1J4 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
Ddb1Q3U1J4 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
Ddb1Q3U1J4 Gm5587-201ENSMUST00000206270 674 ntBASIC23.11■■□□□ 1.29
Ddb1Q3U1J4 AC133598.3-202ENSMUST00000224219 531 ntBASIC23.11■■□□□ 1.29
Ddb1Q3U1J4 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Ddb1Q3U1J4 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC23.11■■□□□ 1.29
Ddb1Q3U1J4 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC23.11■■□□□ 1.29
Ddb1Q3U1J4 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Ddb1Q3U1J4 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
Ddb1Q3U1J4 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
Ddb1Q3U1J4 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC23.1■■□□□ 1.29
Ddb1Q3U1J4 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC23.1■■□□□ 1.29
Ddb1Q3U1J4 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Ddb1Q3U1J4 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC23.1■■□□□ 1.29
Ddb1Q3U1J4 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Ddb1Q3U1J4 Gm17807-201ENSMUST00000186869 298 ntBASIC23.1■■□□□ 1.29
Ddb1Q3U1J4 AC124603.1-201ENSMUST00000223843 308 ntBASIC23.1■■□□□ 1.29
Ddb1Q3U1J4 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Ddb1Q3U1J4 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Ddb1Q3U1J4 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Ddb1Q3U1J4 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Ddb1Q3U1J4 AC124392.1-201ENSMUST00000225172 5324 ntBASIC23.1■■□□□ 1.29
Ddb1Q3U1J4 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
Ddb1Q3U1J4 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Ddb1Q3U1J4 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Ddb1Q3U1J4 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
Ddb1Q3U1J4 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC23.09■■□□□ 1.29
Ddb1Q3U1J4 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC23.09■■□□□ 1.29
Ddb1Q3U1J4 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Ddb1Q3U1J4 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
Ddb1Q3U1J4 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC23.09■■□□□ 1.29
Ddb1Q3U1J4 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC23.09■■□□□ 1.29
Ddb1Q3U1J4 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC23.09■■□□□ 1.29
Ddb1Q3U1J4 Gm4974-201ENSMUST00000209974 875 ntBASIC23.09■■□□□ 1.29
Ddb1Q3U1J4 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC23.09■■□□□ 1.29
Ddb1Q3U1J4 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
Ddb1Q3U1J4 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
Ddb1Q3U1J4 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Ddb1Q3U1J4 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
Ddb1Q3U1J4 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
Ddb1Q3U1J4 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Ddb1Q3U1J4 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Ddb1Q3U1J4 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Ddb1Q3U1J4 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Ddb1Q3U1J4 Gm21559-201ENSMUST00000220638 855 ntBASIC23.08■■□□□ 1.29
Ddb1Q3U1J4 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Ddb1Q3U1J4 Gm8587-201ENSMUST00000076538 843 ntBASIC23.08■■□□□ 1.29
Ddb1Q3U1J4 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC23.08■■□□□ 1.29
Ddb1Q3U1J4 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC23.08■■□□□ 1.29
Ddb1Q3U1J4 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC23.08■■□□□ 1.28
Ddb1Q3U1J4 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC23.08■■□□□ 1.28
Ddb1Q3U1J4 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
Ddb1Q3U1J4 Gm13474-201ENSMUST00000122466 815 ntBASIC23.07■■□□□ 1.28
Ddb1Q3U1J4 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC23.07■■□□□ 1.28
Ddb1Q3U1J4 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC23.07■■□□□ 1.28
Ddb1Q3U1J4 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
Ddb1Q3U1J4 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Retrieved 100 of 76,532 protein–RNA pairs in 37.6 ms