Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Col28a1Q2UY11 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
Col28a1Q2UY11 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Col28a1Q2UY11 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC17.59■□□□□ 0.41
Col28a1Q2UY11 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Col28a1Q2UY11 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Col28a1Q2UY11 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Col28a1Q2UY11 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Col28a1Q2UY11 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Col28a1Q2UY11 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Col28a1Q2UY11 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Col28a1Q2UY11 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Col28a1Q2UY11 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Col28a1Q2UY11 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC17.59■□□□□ 0.41
Col28a1Q2UY11 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Col28a1Q2UY11 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Col28a1Q2UY11 Gm5898-201ENSMUST00000121016 2071 ntBASIC17.59■□□□□ 0.41
Col28a1Q2UY11 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC17.59■□□□□ 0.41
Col28a1Q2UY11 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC17.59■□□□□ 0.41
Col28a1Q2UY11 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
Col28a1Q2UY11 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC17.58■□□□□ 0.41
Col28a1Q2UY11 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Col28a1Q2UY11 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
Col28a1Q2UY11 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
Col28a1Q2UY11 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Col28a1Q2UY11 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC17.58■□□□□ 0.41
Col28a1Q2UY11 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Col28a1Q2UY11 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Col28a1Q2UY11 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Col28a1Q2UY11 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Col28a1Q2UY11 Zcchc6-207ENSMUST00000225576 2499 ntBASIC17.58■□□□□ 0.4
Col28a1Q2UY11 AC122335.2-201ENSMUST00000213901 6181 ntBASIC17.58■□□□□ 0.4
Col28a1Q2UY11 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Col28a1Q2UY11 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col28a1Q2UY11 AC165080.2-201ENSMUST00000217491 1530 ntBASIC17.57■□□□□ 0.4
Col28a1Q2UY11 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col28a1Q2UY11 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col28a1Q2UY11 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col28a1Q2UY11 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC17.57■□□□□ 0.4
Col28a1Q2UY11 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col28a1Q2UY11 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
Col28a1Q2UY11 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC17.57■□□□□ 0.4
Col28a1Q2UY11 AV356131-201ENSMUST00000206201 750 ntBASIC17.57■□□□□ 0.4
Col28a1Q2UY11 Gm10033-202ENSMUST00000211874 928 ntBASIC17.57■□□□□ 0.4
Col28a1Q2UY11 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Col28a1Q2UY11 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Col28a1Q2UY11 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col28a1Q2UY11 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col28a1Q2UY11 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col28a1Q2UY11 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Col28a1Q2UY11 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC17.56■□□□□ 0.4
Col28a1Q2UY11 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col28a1Q2UY11 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col28a1Q2UY11 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col28a1Q2UY11 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC17.56■□□□□ 0.4
Col28a1Q2UY11 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col28a1Q2UY11 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col28a1Q2UY11 AC121598.2-201ENSMUST00000228376 2325 ntBASIC17.56■□□□□ 0.4
Col28a1Q2UY11 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col28a1Q2UY11 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col28a1Q2UY11 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col28a1Q2UY11 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col28a1Q2UY11 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col28a1Q2UY11 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Col28a1Q2UY11 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC17.55■□□□□ 0.4
Col28a1Q2UY11 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col28a1Q2UY11 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col28a1Q2UY11 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Col28a1Q2UY11 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col28a1Q2UY11 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col28a1Q2UY11 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col28a1Q2UY11 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col28a1Q2UY11 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col28a1Q2UY11 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col28a1Q2UY11 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
Col28a1Q2UY11 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col28a1Q2UY11 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col28a1Q2UY11 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col28a1Q2UY11 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col28a1Q2UY11 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col28a1Q2UY11 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC17.55■□□□□ 0.4
Col28a1Q2UY11 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Col28a1Q2UY11 Gm6598-201ENSMUST00000202719 2615 ntBASIC17.54■□□□□ 0.4
Col28a1Q2UY11 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col28a1Q2UY11 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col28a1Q2UY11 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col28a1Q2UY11 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col28a1Q2UY11 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col28a1Q2UY11 Gm10461-201ENSMUST00000202073 4786 ntBASIC17.54■□□□□ 0.4
Col28a1Q2UY11 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC17.54■□□□□ 0.4
Col28a1Q2UY11 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col28a1Q2UY11 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC17.54■□□□□ 0.4
Col28a1Q2UY11 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Col28a1Q2UY11 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col28a1Q2UY11 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Col28a1Q2UY11 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col28a1Q2UY11 Gm9194-201ENSMUST00000220749 1447 ntBASIC17.54■□□□□ 0.4
Col28a1Q2UY11 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Col28a1Q2UY11 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Col28a1Q2UY11 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 49.2 ms