Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ptchd3Q0EEE2 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ptchd3Q0EEE2 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ptchd3Q0EEE2 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ptchd3Q0EEE2 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ptchd3Q0EEE2 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Ptchd3Q0EEE2 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ptchd3Q0EEE2 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ptchd3Q0EEE2 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ptchd3Q0EEE2 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ptchd3Q0EEE2 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC17.5■□□□□ 0.39
Ptchd3Q0EEE2 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ptchd3Q0EEE2 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Ptchd3Q0EEE2 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ptchd3Q0EEE2 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ptchd3Q0EEE2 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC17.5■□□□□ 0.39
Ptchd3Q0EEE2 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC17.5■□□□□ 0.39
Ptchd3Q0EEE2 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ptchd3Q0EEE2 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Ptchd3Q0EEE2 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ptchd3Q0EEE2 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ptchd3Q0EEE2 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ptchd3Q0EEE2 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC17.5■□□□□ 0.39
Ptchd3Q0EEE2 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ptchd3Q0EEE2 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ptchd3Q0EEE2 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Ptchd3Q0EEE2 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Ptchd3Q0EEE2 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC17.49■□□□□ 0.39
Ptchd3Q0EEE2 Gm45906-201ENSMUST00000208911 1430 ntBASIC17.49■□□□□ 0.39
Ptchd3Q0EEE2 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Ptchd3Q0EEE2 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ptchd3Q0EEE2 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ptchd3Q0EEE2 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Ptchd3Q0EEE2 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC17.49■□□□□ 0.39
Ptchd3Q0EEE2 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ptchd3Q0EEE2 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ptchd3Q0EEE2 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
Ptchd3Q0EEE2 AC121598.2-201ENSMUST00000228376 2325 ntBASIC17.49■□□□□ 0.39
Ptchd3Q0EEE2 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ptchd3Q0EEE2 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ptchd3Q0EEE2 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ptchd3Q0EEE2 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Ptchd3Q0EEE2 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ptchd3Q0EEE2 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Ptchd3Q0EEE2 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ptchd3Q0EEE2 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ptchd3Q0EEE2 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ptchd3Q0EEE2 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ptchd3Q0EEE2 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ptchd3Q0EEE2 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ptchd3Q0EEE2 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Ptchd3Q0EEE2 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC17.48■□□□□ 0.39
Ptchd3Q0EEE2 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ptchd3Q0EEE2 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ptchd3Q0EEE2 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
Ptchd3Q0EEE2 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Ptchd3Q0EEE2 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ptchd3Q0EEE2 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
Ptchd3Q0EEE2 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ptchd3Q0EEE2 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
Ptchd3Q0EEE2 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ptchd3Q0EEE2 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Ptchd3Q0EEE2 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
Ptchd3Q0EEE2 CT030146.1-201ENSMUST00000220919 217 ntBASIC17.48■□□□□ 0.39
Ptchd3Q0EEE2 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC17.48■□□□□ 0.39
Ptchd3Q0EEE2 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ptchd3Q0EEE2 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ptchd3Q0EEE2 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ptchd3Q0EEE2 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Ptchd3Q0EEE2 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ptchd3Q0EEE2 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ptchd3Q0EEE2 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ptchd3Q0EEE2 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ptchd3Q0EEE2 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Ptchd3Q0EEE2 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Ptchd3Q0EEE2 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ptchd3Q0EEE2 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ptchd3Q0EEE2 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ptchd3Q0EEE2 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ptchd3Q0EEE2 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC17.47■□□□□ 0.39
Ptchd3Q0EEE2 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Ptchd3Q0EEE2 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC17.47■□□□□ 0.39
Ptchd3Q0EEE2 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ptchd3Q0EEE2 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC17.47■□□□□ 0.39
Ptchd3Q0EEE2 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
Ptchd3Q0EEE2 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Ptchd3Q0EEE2 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ptchd3Q0EEE2 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Ptchd3Q0EEE2 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ptchd3Q0EEE2 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Ptchd3Q0EEE2 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Ptchd3Q0EEE2 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC17.46■□□□□ 0.39
Ptchd3Q0EEE2 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Ptchd3Q0EEE2 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ptchd3Q0EEE2 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ptchd3Q0EEE2 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Ptchd3Q0EEE2 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
Ptchd3Q0EEE2 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC17.46■□□□□ 0.38
Ptchd3Q0EEE2 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Ptchd3Q0EEE2 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 27.4 ms