Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Nkx3-1P97436 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Nkx3-1P97436 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Nkx3-1P97436 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Nkx3-1P97436 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Nkx3-1P97436 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Nkx3-1P97436 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Nkx3-1P97436 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Nkx3-1P97436 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Nkx3-1P97436 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC15.67■□□□□ 0.1
Nkx3-1P97436 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC15.67■□□□□ 0.1
Nkx3-1P97436 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC15.67■□□□□ 0.1
Nkx3-1P97436 AC130671.1-201ENSMUST00000227384 1237 ntBASIC15.67■□□□□ 0.1
Nkx3-1P97436 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Nkx3-1P97436 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Nkx3-1P97436 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC15.67■□□□□ 0.1
Nkx3-1P97436 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Nkx3-1P97436 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Nkx3-1P97436 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Nkx3-1P97436 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Nkx3-1P97436 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Nkx3-1P97436 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Nkx3-1P97436 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Nkx3-1P97436 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Nkx3-1P97436 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Nkx3-1P97436 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Nkx3-1P97436 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Nkx3-1P97436 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Nkx3-1P97436 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Nkx3-1P97436 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Nkx3-1P97436 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Nkx3-1P97436 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Nkx3-1P97436 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Nkx3-1P97436 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Nkx3-1P97436 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Nkx3-1P97436 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Nkx3-1P97436 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Nkx3-1P97436 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Nkx3-1P97436 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Nkx3-1P97436 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Nkx3-1P97436 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Nkx3-1P97436 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Nkx3-1P97436 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Nkx3-1P97436 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Nkx3-1P97436 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Nkx3-1P97436 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Nkx3-1P97436 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC15.65■□□□□ 0.1
Nkx3-1P97436 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Nkx3-1P97436 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Nkx3-1P97436 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Nkx3-1P97436 Gm15375-201ENSMUST00000119510 849 ntBASIC15.65■□□□□ 0.1
Nkx3-1P97436 Gm38285-201ENSMUST00000192928 922 ntBASIC15.65■□□□□ 0.1
Nkx3-1P97436 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC15.65■□□□□ 0.1
Nkx3-1P97436 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC15.65■□□□□ 0.1
Nkx3-1P97436 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Nkx3-1P97436 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Nkx3-1P97436 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Nkx3-1P97436 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Nkx3-1P97436 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Nkx3-1P97436 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
Nkx3-1P97436 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Nkx3-1P97436 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Nkx3-1P97436 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Nkx3-1P97436 AC124581.1-201ENSMUST00000225416 1399 ntBASIC15.64■□□□□ 0.09
Nkx3-1P97436 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Nkx3-1P97436 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Nkx3-1P97436 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC15.64■□□□□ 0.09
Nkx3-1P97436 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Nkx3-1P97436 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC15.64■□□□□ 0.09
Nkx3-1P97436 Gm42545-201ENSMUST00000202755 922 ntBASIC15.64■□□□□ 0.09
Nkx3-1P97436 Gm18025-201ENSMUST00000221733 862 ntBASIC15.64■□□□□ 0.09
Nkx3-1P97436 AC121577.1-201ENSMUST00000227302 707 ntBASIC15.64■□□□□ 0.09
Nkx3-1P97436 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Nkx3-1P97436 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Nkx3-1P97436 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
Nkx3-1P97436 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Nkx3-1P97436 Gm45560-201ENSMUST00000211492 1472 ntBASIC15.64■□□□□ 0.09
Nkx3-1P97436 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC15.64■□□□□ 0.09
Nkx3-1P97436 AC122335.2-201ENSMUST00000213901 6181 ntBASIC15.64■□□□□ 0.09
Nkx3-1P97436 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Nkx3-1P97436 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
Nkx3-1P97436 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC15.63■□□□□ 0.09
Nkx3-1P97436 Dapk1-207ENSMUST00000226059 5009 ntBASIC15.63■□□□□ 0.09
Nkx3-1P97436 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Nkx3-1P97436 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
Nkx3-1P97436 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Nkx3-1P97436 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC15.63■□□□□ 0.09
Nkx3-1P97436 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Nkx3-1P97436 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Nkx3-1P97436 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
Nkx3-1P97436 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
Nkx3-1P97436 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
Nkx3-1P97436 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Nkx3-1P97436 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Nkx3-1P97436 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
Nkx3-1P97436 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Nkx3-1P97436 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC15.62■□□□□ 0.09
Nkx3-1P97436 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Nkx3-1P97436 Gm43799-201ENSMUST00000201845 579 ntBASIC15.62■□□□□ 0.09
Nkx3-1P97436 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC15.62■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 24.9 ms