Protein–RNA interactions for Protein: P70354

Msx3, Homeobox protein MSX-3, mousemouse

Predictions only

Length 204 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx3P70354 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Msx3P70354 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Msx3P70354 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Msx3P70354 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Msx3P70354 Gm42939-201ENSMUST00000197514 2205 ntBASIC18.65■□□□□ 0.58
Msx3P70354 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Msx3P70354 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Msx3P70354 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Msx3P70354 Gm38345-201ENSMUST00000192635 1748 ntBASIC18.65■□□□□ 0.58
Msx3P70354 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Msx3P70354 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC18.65■□□□□ 0.58
Msx3P70354 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Msx3P70354 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Msx3P70354 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Msx3P70354 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Msx3P70354 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Msx3P70354 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Msx3P70354 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC18.64■□□□□ 0.58
Msx3P70354 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC18.64■□□□□ 0.58
Msx3P70354 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
Msx3P70354 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Msx3P70354 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Msx3P70354 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Msx3P70354 AC122335.2-201ENSMUST00000213901 6181 ntBASIC18.64■□□□□ 0.57
Msx3P70354 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Msx3P70354 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Msx3P70354 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.57
Msx3P70354 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Msx3P70354 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Msx3P70354 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Msx3P70354 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Msx3P70354 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Msx3P70354 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Msx3P70354 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Msx3P70354 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Msx3P70354 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Msx3P70354 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
Msx3P70354 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Msx3P70354 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC18.63■□□□□ 0.57
Msx3P70354 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC18.63■□□□□ 0.57
Msx3P70354 Gm5828-201ENSMUST00000071842 1860 ntBASIC18.63■□□□□ 0.57
Msx3P70354 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Msx3P70354 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Msx3P70354 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Msx3P70354 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Msx3P70354 Gm7290-201ENSMUST00000104990 617 ntBASIC18.62■□□□□ 0.57
Msx3P70354 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC18.62■□□□□ 0.57
Msx3P70354 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Msx3P70354 Gm12918-201ENSMUST00000120234 636 ntBASIC18.62■□□□□ 0.57
Msx3P70354 Gm15710-201ENSMUST00000121821 636 ntBASIC18.62■□□□□ 0.57
Msx3P70354 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC18.62■□□□□ 0.57
Msx3P70354 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Msx3P70354 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Msx3P70354 Gm8495-201ENSMUST00000188740 694 ntBASIC18.62■□□□□ 0.57
Msx3P70354 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC18.62■□□□□ 0.57
Msx3P70354 Gm5075-201ENSMUST00000196916 622 ntBASIC18.62■□□□□ 0.57
Msx3P70354 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC18.62■□□□□ 0.57
Msx3P70354 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC18.62■□□□□ 0.57
Msx3P70354 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Msx3P70354 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Msx3P70354 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC18.62■□□□□ 0.57
Msx3P70354 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC18.62■□□□□ 0.57
Msx3P70354 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Msx3P70354 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Msx3P70354 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Msx3P70354 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Msx3P70354 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Msx3P70354 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Msx3P70354 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Msx3P70354 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Msx3P70354 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Msx3P70354 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Msx3P70354 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Msx3P70354 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Msx3P70354 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Msx3P70354 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Msx3P70354 Gm13509-201ENSMUST00000119733 1308 ntBASIC18.61■□□□□ 0.57
Msx3P70354 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Msx3P70354 Gm26571-201ENSMUST00000181399 666 ntBASIC18.61■□□□□ 0.57
Msx3P70354 Gm42569-201ENSMUST00000200539 472 ntBASIC18.61■□□□□ 0.57
Msx3P70354 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Msx3P70354 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Msx3P70354 Dmtn-207ENSMUST00000228001 2437 ntBASIC18.61■□□□□ 0.57
Msx3P70354 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Msx3P70354 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Msx3P70354 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC18.6■□□□□ 0.57
Msx3P70354 Fst-202ENSMUST00000223640 2612 ntBASIC18.6■□□□□ 0.57
Msx3P70354 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Msx3P70354 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
Msx3P70354 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC18.6■□□□□ 0.57
Msx3P70354 Gm6365-201ENSMUST00000054711 744 ntBASIC18.6■□□□□ 0.57
Msx3P70354 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Msx3P70354 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Msx3P70354 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Msx3P70354 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Msx3P70354 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Msx3P70354 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Msx3P70354 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Msx3P70354 Gm10461-201ENSMUST00000202073 4786 ntBASIC18.59■□□□□ 0.57
Msx3P70354 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 61.1 ms