Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Hmgb3O54879 Ralgapa1-201ENSMUST00000085385 7901 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
Hmgb3O54879 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Hmgb3O54879 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Hmgb3O54879 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC15.06■□□□□ 0
Hmgb3O54879 Serp2-204ENSMUST00000228055 705 ntBASIC15.06■□□□□ 0
Hmgb3O54879 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Hmgb3O54879 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC15.06■□□□□ 0
Hmgb3O54879 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC15.06■□□□□ 0
Hmgb3O54879 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC15.06■□□□□ 0
Hmgb3O54879 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Hmgb3O54879 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC15.06■□□□□ 0
Hmgb3O54879 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC15.06■□□□□ 0
Hmgb3O54879 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
Hmgb3O54879 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ 0
Hmgb3O54879 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
Hmgb3O54879 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ 0
Hmgb3O54879 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Hmgb3O54879 Gm7417-201ENSMUST00000192950 473 ntBASIC15.05■□□□□ -0
Hmgb3O54879 Gm15820-201ENSMUST00000201566 728 ntBASIC15.05■□□□□ -0
Hmgb3O54879 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC15.05■□□□□ -0
Hmgb3O54879 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Hmgb3O54879 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Hmgb3O54879 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Hmgb3O54879 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Hmgb3O54879 Dnajc1-209ENSMUST00000166495 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Hmgb3O54879 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
Hmgb3O54879 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
Hmgb3O54879 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Hmgb3O54879 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Hmgb3O54879 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Hmgb3O54879 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC15.04■□□□□ -0
Hmgb3O54879 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Hmgb3O54879 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Hmgb3O54879 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Hmgb3O54879 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Hmgb3O54879 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC15.04■□□□□ -0
Hmgb3O54879 Gm8770-201ENSMUST00000121113 1109 ntBASIC15.04■□□□□ -0
Hmgb3O54879 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC15.04■□□□□ -0
Hmgb3O54879 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC15.04■□□□□ -0
Hmgb3O54879 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Hmgb3O54879 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Hmgb3O54879 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC15.04■□□□□ -0
Hmgb3O54879 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC15.04■□□□□ -0
Hmgb3O54879 Fbxo41-202ENSMUST00000161078 6562 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Hmgb3O54879 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Hmgb3O54879 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC15.04■□□□□ -0
Hmgb3O54879 Lurap1-201ENSMUST00000030469 5742 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Hmgb3O54879 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC15.03■□□□□ -0
Hmgb3O54879 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
Hmgb3O54879 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Hmgb3O54879 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC15.03■□□□□ -0
Hmgb3O54879 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Hmgb3O54879 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Hmgb3O54879 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC15.03■□□□□ -0
Hmgb3O54879 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Hmgb3O54879 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC15.03■□□□□ -0
Hmgb3O54879 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Hmgb3O54879 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Hmgb3O54879 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Hmgb3O54879 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Hmgb3O54879 Fst-202ENSMUST00000223640 2612 ntBASIC15.03■□□□□ -0
Hmgb3O54879 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Hmgb3O54879 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Hmgb3O54879 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Hmgb3O54879 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC15.03■□□□□ -0
Hmgb3O54879 Rsbn1-202ENSMUST00000068879 6712 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Hmgb3O54879 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Hmgb3O54879 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Hmgb3O54879 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
Hmgb3O54879 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC15.02■□□□□ -0
Hmgb3O54879 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Hmgb3O54879 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Hmgb3O54879 Rab22a-201ENSMUST00000029024 7155 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Hmgb3O54879 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
Hmgb3O54879 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC15.02■□□□□ -0
Hmgb3O54879 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Hmgb3O54879 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Hmgb3O54879 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC15.02□□□□□ -0.01
Hmgb3O54879 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Hmgb3O54879 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Hmgb3O54879 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Hmgb3O54879 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Hmgb3O54879 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Hmgb3O54879 Dst-213ENSMUST00000183302 8788 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Hmgb3O54879 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Hmgb3O54879 Ddhd1-202ENSMUST00000087320 9820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Hmgb3O54879 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Hmgb3O54879 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Hmgb3O54879 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Hmgb3O54879 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Hmgb3O54879 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Hmgb3O54879 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Hmgb3O54879 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC15.01□□□□□ -0.01
Hmgb3O54879 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Hmgb3O54879 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Hmgb3O54879 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Hmgb3O54879 Dido1-202ENSMUST00000087517 8723 ntAPPRIS P4 TSL 1 (best) BASIC15.01□□□□□ -0.01
Hmgb3O54879 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC15.01□□□□□ -0.01
Hmgb3O54879 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 23.1 ms