Protein–RNA interactions for Protein: O35493

Clk4, Dual specificity protein kinase CLK4, mousemouse

Predictions only

Length 481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk4O35493 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Clk4O35493 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Clk4O35493 BC021767-201ENSMUST00000126387 1716 ntBASIC17.38■□□□□ 0.37
Clk4O35493 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Clk4O35493 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Clk4O35493 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Clk4O35493 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Clk4O35493 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Clk4O35493 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC17.37■□□□□ 0.37
Clk4O35493 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Clk4O35493 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Clk4O35493 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Clk4O35493 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Clk4O35493 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
Clk4O35493 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Clk4O35493 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Clk4O35493 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Clk4O35493 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC17.37■□□□□ 0.37
Clk4O35493 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Clk4O35493 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Clk4O35493 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Clk4O35493 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Clk4O35493 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Clk4O35493 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Clk4O35493 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Clk4O35493 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Clk4O35493 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Clk4O35493 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Clk4O35493 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Clk4O35493 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Clk4O35493 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Clk4O35493 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Clk4O35493 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Clk4O35493 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Clk4O35493 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Clk4O35493 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Clk4O35493 Gm45141-201ENSMUST00000206502 1888 ntBASIC17.36■□□□□ 0.37
Clk4O35493 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Clk4O35493 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Clk4O35493 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC17.36■□□□□ 0.37
Clk4O35493 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Clk4O35493 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Clk4O35493 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Clk4O35493 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Clk4O35493 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Clk4O35493 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Clk4O35493 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Clk4O35493 Gm6627-201ENSMUST00000218299 2386 ntBASIC17.35■□□□□ 0.37
Clk4O35493 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC17.35■□□□□ 0.37
Clk4O35493 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Clk4O35493 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Clk4O35493 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Clk4O35493 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Clk4O35493 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC17.35■□□□□ 0.37
Clk4O35493 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Clk4O35493 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Clk4O35493 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC17.35■□□□□ 0.37
Clk4O35493 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Clk4O35493 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Clk4O35493 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Clk4O35493 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC17.35■□□□□ 0.37
Clk4O35493 Gm43672-201ENSMUST00000199072 1731 ntBASIC17.35■□□□□ 0.37
Clk4O35493 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Clk4O35493 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Clk4O35493 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Clk4O35493 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Clk4O35493 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Clk4O35493 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Clk4O35493 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC17.34■□□□□ 0.37
Clk4O35493 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC17.34■□□□□ 0.37
Clk4O35493 Gm37563-201ENSMUST00000192580 1513 ntBASIC17.34■□□□□ 0.37
Clk4O35493 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Clk4O35493 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Clk4O35493 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Clk4O35493 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Clk4O35493 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Clk4O35493 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Clk4O35493 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Clk4O35493 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Clk4O35493 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Clk4O35493 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Clk4O35493 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Clk4O35493 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Clk4O35493 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Clk4O35493 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Clk4O35493 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Clk4O35493 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Clk4O35493 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Clk4O35493 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Clk4O35493 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
Clk4O35493 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Clk4O35493 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
Clk4O35493 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC17.33■□□□□ 0.36
Clk4O35493 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Clk4O35493 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Clk4O35493 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Clk4O35493 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Clk4O35493 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Clk4O35493 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Clk4O35493 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 30.9 ms