Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 4833413G10Rik-201ENSMUST00000199632 1946 ntBASIC5.17□□□□□ -1.58
Sdc1P18828 Sh2d1b1-201ENSMUST00000179976 2544 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
Sdc1P18828 Cr2-208ENSMUST00000195120 6212 ntTSL 5 BASIC5.17□□□□□ -1.58
Sdc1P18828 Zfp442-201ENSMUST00000109916 2922 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
Sdc1P18828 4930525G20Rik-201ENSMUST00000181912 2987 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
Sdc1P18828 Amz2-201ENSMUST00000020929 1811 ntAPPRIS ALT2 TSL 2 BASIC5.16□□□□□ -1.58
Sdc1P18828 Mmp13-201ENSMUST00000015394 2673 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
Sdc1P18828 Pias1-202ENSMUST00000214830 2492 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
Sdc1P18828 Kif2a-204ENSMUST00000122233 3533 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
Sdc1P18828 Olfr1392-203ENSMUST00000214170 3507 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
Sdc1P18828 Olfr1392-205ENSMUST00000214598 3506 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
Sdc1P18828 Ralgapa2-202ENSMUST00000109986 11030 ntAPPRIS P2 TSL 5 BASIC5.16□□□□□ -1.58
Sdc1P18828 Mir711-201ENSMUST00000102188 82 ntBASIC5.16□□□□□ -1.58
Sdc1P18828 Gm41-201ENSMUST00000116183 1023 ntBASIC5.16□□□□□ -1.58
Sdc1P18828 Gm14756-201ENSMUST00000116395 240 ntBASIC5.16□□□□□ -1.58
Sdc1P18828 Gm14869-201ENSMUST00000119007 884 ntBASIC5.16□□□□□ -1.58
Sdc1P18828 Gm8430-201ENSMUST00000119780 471 ntBASIC5.16□□□□□ -1.58
Sdc1P18828 Gm11371-201ENSMUST00000120294 385 ntBASIC5.16□□□□□ -1.58
Sdc1P18828 Gm8089-201ENSMUST00000122463 968 ntBASIC5.16□□□□□ -1.58
Sdc1P18828 Gm12863-201ENSMUST00000155069 536 ntTSL 2 BASIC5.16□□□□□ -1.58
Sdc1P18828 Gm22636-201ENSMUST00000158142 275 ntBASIC5.16□□□□□ -1.58
Sdc1P18828 Gm25437-201ENSMUST00000158282 132 ntBASIC5.16□□□□□ -1.58
Sdc1P18828 Rpl29-ps1-201ENSMUST00000161849 508 ntBASIC5.16□□□□□ -1.58
Sdc1P18828 Gm7991-201ENSMUST00000168668 591 ntBASIC5.16□□□□□ -1.58
Sdc1P18828 Gm2951-201ENSMUST00000169447 490 ntBASIC5.16□□□□□ -1.58
Sdc1P18828 Gm6536-201ENSMUST00000171180 615 ntBASIC5.16□□□□□ -1.58
Sdc1P18828 Gm17202-201ENSMUST00000171723 951 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
Sdc1P18828 1110038B12Rik-201ENSMUST00000172501 579 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
Sdc1P18828 Gm26901-201ENSMUST00000181554 1193 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
Sdc1P18828 Gm27037-201ENSMUST00000182270 960 ntBASIC5.16□□□□□ -1.58
Sdc1P18828 Gm29471-201ENSMUST00000190527 700 ntBASIC5.16□□□□□ -1.58
Sdc1P18828 Gm38200-201ENSMUST00000192083 2111 ntBASIC5.16□□□□□ -1.58
Sdc1P18828 Ighv1-45-201ENSMUST00000193677 352 ntBASIC5.16□□□□□ -1.58
Sdc1P18828 Olfr1409-ps1-201ENSMUST00000194013 252 ntBASIC5.16□□□□□ -1.58
Sdc1P18828 Gm30517-201ENSMUST00000197350 772 ntBASIC5.16□□□□□ -1.58
Sdc1P18828 Gm38413-201ENSMUST00000197852 348 ntTSL 2 BASIC5.16□□□□□ -1.58
Sdc1P18828 Gm42640-201ENSMUST00000199792 1195 ntBASIC5.16□□□□□ -1.58
Sdc1P18828 Gm43377-201ENSMUST00000201640 455 ntBASIC5.16□□□□□ -1.58
Sdc1P18828 Gm44176-201ENSMUST00000204336 276 ntTSL 5 BASIC5.16□□□□□ -1.58
Sdc1P18828 Gm45008-201ENSMUST00000206420 493 ntBASIC5.16□□□□□ -1.58
Sdc1P18828 Gm6009-201ENSMUST00000210848 280 ntBASIC5.16□□□□□ -1.58
Sdc1P18828 AC099934.5-201ENSMUST00000222699 945 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
Sdc1P18828 AC141425.1-201ENSMUST00000224989 265 ntBASIC5.16□□□□□ -1.58
Sdc1P18828 Eif3k-201ENSMUST00000066070 774 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
Sdc1P18828 AW822073-201ENSMUST00000075305 555 ntBASIC5.16□□□□□ -1.58
Sdc1P18828 Rps27a-ps2-201ENSMUST00000078766 467 ntBASIC5.16□□□□□ -1.58
Sdc1P18828 Olfr641-201ENSMUST00000098183 939 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
Sdc1P18828 Olfr703-202ENSMUST00000216254 1920 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
Sdc1P18828 Zfp455-201ENSMUST00000117110 2556 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
Sdc1P18828 Gm37717-201ENSMUST00000192647 3027 ntBASIC5.16□□□□□ -1.58
Sdc1P18828 Ankrd34c-201ENSMUST00000060700 5457 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
Sdc1P18828 Prom1-207ENSMUST00000177946 3534 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
Sdc1P18828 1700080N15Rik-202ENSMUST00000154360 1316 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
Sdc1P18828 Mir99ahg-201ENSMUST00000068704 2858 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
Sdc1P18828 Gm38126-201ENSMUST00000195297 4003 ntBASIC5.16□□□□□ -1.58
Sdc1P18828 Sox6-204ENSMUST00000166877 8079 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
Sdc1P18828 Crem-230ENSMUST00000151311 2485 ntAPPRIS ALT1 TSL 5 BASIC5.16□□□□□ -1.58
Sdc1P18828 Ceacam12-202ENSMUST00000108483 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
Sdc1P18828 AC124516.2-201ENSMUST00000221455 1829 ntBASIC5.16□□□□□ -1.58
Sdc1P18828 Ssbp1-202ENSMUST00000114779 4398 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
Sdc1P18828 Myo1b-204ENSMUST00000114541 4616 ntTSL 5 BASIC5.16□□□□□ -1.58
Sdc1P18828 Gm42508-201ENSMUST00000199972 3292 ntBASIC5.15□□□□□ -1.58
Sdc1P18828 Scn2a-201ENSMUST00000028377 8935 ntAPPRIS P3 TSL 5 BASIC5.15□□□□□ -1.58
Sdc1P18828 AC152944.1-201ENSMUST00000220160 3101 ntBASIC5.15□□□□□ -1.58
Sdc1P18828 Hspa9-ps1-201ENSMUST00000119602 1933 ntBASIC5.15□□□□□ -1.58
Sdc1P18828 Tank-202ENSMUST00000112494 2698 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
Sdc1P18828 Vmn1r208-202ENSMUST00000227136 3156 ntAPPRIS P1 BASIC5.15□□□□□ -1.58
Sdc1P18828 Slc14a1-201ENSMUST00000091813 3665 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.58
Sdc1P18828 Serpinb6e-201ENSMUST00000110275 1494 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.58
Sdc1P18828 Psd3-205ENSMUST00000098696 11316 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.58
Sdc1P18828 Gm3453-201ENSMUST00000170686 1756 ntAPPRIS P5 TSL 5 BASIC5.15□□□□□ -1.58
Sdc1P18828 Gm29198-201ENSMUST00000190102 1512 ntTSL 5 BASIC5.15□□□□□ -1.58
Sdc1P18828 Dnase1l1-202ENSMUST00000075821 1511 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
Sdc1P18828 Olfr353-201ENSMUST00000100149 936 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
Sdc1P18828 Igkv10-96-201ENSMUST00000103328 359 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
Sdc1P18828 Gm22660-201ENSMUST00000104193 130 ntBASIC5.15□□□□□ -1.59
Sdc1P18828 Gm25724-201ENSMUST00000104531 117 ntBASIC5.15□□□□□ -1.59
Sdc1P18828 Gm25564-201ENSMUST00000104604 132 ntBASIC5.15□□□□□ -1.59
Sdc1P18828 Gstm6-203ENSMUST00000106683 745 ntTSL 3 BASIC5.15□□□□□ -1.59
Sdc1P18828 Mup3-203ENSMUST00000107488 984 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
Sdc1P18828 Gm12713-201ENSMUST00000118404 764 ntBASIC5.15□□□□□ -1.59
Sdc1P18828 Gm12361-201ENSMUST00000119806 1044 ntBASIC5.15□□□□□ -1.59
Sdc1P18828 Nlk-ps1-201ENSMUST00000120843 1230 ntBASIC5.15□□□□□ -1.59
Sdc1P18828 Gm15730-201ENSMUST00000121828 415 ntBASIC5.15□□□□□ -1.59
Sdc1P18828 Gm12273-201ENSMUST00000137418 1084 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
Sdc1P18828 Gm12027-201ENSMUST00000146531 949 ntTSL 5 BASIC5.15□□□□□ -1.59
Sdc1P18828 Samd13-204ENSMUST00000147113 729 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.59
Sdc1P18828 Calml4-202ENSMUST00000163820 699 ntTSL 2 BASIC5.15□□□□□ -1.59
Sdc1P18828 Trav7n-6-201ENSMUST00000178100 381 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
Sdc1P18828 Gm4845-201ENSMUST00000179202 562 ntBASIC5.15□□□□□ -1.59
Sdc1P18828 Gm27866-201ENSMUST00000184459 171 ntBASIC5.15□□□□□ -1.59
Sdc1P18828 Gm28358-201ENSMUST00000187860 636 ntTSL 5 BASIC5.15□□□□□ -1.59
Sdc1P18828 Gm29489-201ENSMUST00000188934 324 ntBASIC5.15□□□□□ -1.59
Sdc1P18828 Gm29348-201ENSMUST00000189555 779 ntTSL 3 BASIC5.15□□□□□ -1.59
Sdc1P18828 I830127L07Rik-202ENSMUST00000190944 405 ntBASIC5.15□□□□□ -1.59
Sdc1P18828 Pkia-203ENSMUST00000193330 631 ntAPPRIS P1 TSL 2 BASIC5.15□□□□□ -1.59
Sdc1P18828 Gm42161-201ENSMUST00000196278 726 ntTSL 5 BASIC5.15□□□□□ -1.59
Sdc1P18828 Gm42461-201ENSMUST00000198627 1150 ntBASIC5.15□□□□□ -1.59
Sdc1P18828 Gm32158-201ENSMUST00000200135 404 ntBASIC5.15□□□□□ -1.59
Sdc1P18828 Gm44643-201ENSMUST00000208542 674 ntTSL 3 BASIC5.15□□□□□ -1.59
Retrieved 100 of 76,532 protein–RNA pairs in 63.3 ms