Protein–RNA interactions for Protein: Q9JIF7

Copb1, Coatomer subunit beta, mousemouse

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Copb1Q9JIF7 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Copb1Q9JIF7 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Copb1Q9JIF7 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
Copb1Q9JIF7 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Copb1Q9JIF7 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Copb1Q9JIF7 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
Copb1Q9JIF7 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC19.91■□□□□ 0.78
Copb1Q9JIF7 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Copb1Q9JIF7 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Copb1Q9JIF7 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC19.91■□□□□ 0.78
Copb1Q9JIF7 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC19.91■□□□□ 0.78
Copb1Q9JIF7 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Copb1Q9JIF7 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Copb1Q9JIF7 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Copb1Q9JIF7 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC19.91■□□□□ 0.78
Copb1Q9JIF7 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC19.91■□□□□ 0.78
Copb1Q9JIF7 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC19.91■□□□□ 0.78
Copb1Q9JIF7 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Copb1Q9JIF7 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Copb1Q9JIF7 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Copb1Q9JIF7 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC19.9■□□□□ 0.78
Copb1Q9JIF7 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Copb1Q9JIF7 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Copb1Q9JIF7 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Copb1Q9JIF7 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Copb1Q9JIF7 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Copb1Q9JIF7 AC131586.2-201ENSMUST00000228370 1512 ntBASIC19.9■□□□□ 0.78
Copb1Q9JIF7 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Copb1Q9JIF7 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Copb1Q9JIF7 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Copb1Q9JIF7 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Copb1Q9JIF7 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
Copb1Q9JIF7 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Copb1Q9JIF7 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Copb1Q9JIF7 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Copb1Q9JIF7 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC19.89■□□□□ 0.78
Copb1Q9JIF7 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.78
Copb1Q9JIF7 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Copb1Q9JIF7 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Copb1Q9JIF7 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Copb1Q9JIF7 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Copb1Q9JIF7 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Copb1Q9JIF7 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC19.89■□□□□ 0.77
Copb1Q9JIF7 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Copb1Q9JIF7 Gm10129-202ENSMUST00000193100 1316 ntBASIC19.89■□□□□ 0.77
Copb1Q9JIF7 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Copb1Q9JIF7 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC19.89■□□□□ 0.77
Copb1Q9JIF7 AC160393.1-201ENSMUST00000218378 1279 ntBASIC19.89■□□□□ 0.77
Copb1Q9JIF7 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Copb1Q9JIF7 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Copb1Q9JIF7 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Copb1Q9JIF7 Zcchc6-207ENSMUST00000225576 2499 ntBASIC19.88■□□□□ 0.77
Copb1Q9JIF7 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Copb1Q9JIF7 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Copb1Q9JIF7 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Copb1Q9JIF7 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Copb1Q9JIF7 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Copb1Q9JIF7 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
Copb1Q9JIF7 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC19.88■□□□□ 0.77
Copb1Q9JIF7 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC19.88■□□□□ 0.77
Copb1Q9JIF7 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Copb1Q9JIF7 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Copb1Q9JIF7 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Copb1Q9JIF7 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
Copb1Q9JIF7 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Copb1Q9JIF7 Fcho2-208ENSMUST00000224992 2964 ntBASIC19.87■□□□□ 0.77
Copb1Q9JIF7 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Copb1Q9JIF7 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Copb1Q9JIF7 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Copb1Q9JIF7 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
Copb1Q9JIF7 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Copb1Q9JIF7 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Copb1Q9JIF7 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
Copb1Q9JIF7 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Copb1Q9JIF7 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Copb1Q9JIF7 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Copb1Q9JIF7 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Copb1Q9JIF7 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC19.86■□□□□ 0.77
Copb1Q9JIF7 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Copb1Q9JIF7 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Copb1Q9JIF7 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Copb1Q9JIF7 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
Copb1Q9JIF7 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Copb1Q9JIF7 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Copb1Q9JIF7 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
Copb1Q9JIF7 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Copb1Q9JIF7 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Copb1Q9JIF7 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Copb1Q9JIF7 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Copb1Q9JIF7 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Copb1Q9JIF7 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Copb1Q9JIF7 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Copb1Q9JIF7 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Copb1Q9JIF7 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC19.85■□□□□ 0.77
Copb1Q9JIF7 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC19.85■□□□□ 0.77
Copb1Q9JIF7 Gm10655-201ENSMUST00000098658 1397 ntBASIC19.85■□□□□ 0.77
Copb1Q9JIF7 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Copb1Q9JIF7 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Copb1Q9JIF7 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC19.85■□□□□ 0.77
Copb1Q9JIF7 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 51.9 ms