Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Gm6598-201ENSMUST00000202719 2615 ntBASIC17.97■□□□□ 0.47
Lima1Q9ERG0 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Lima1Q9ERG0 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Lima1Q9ERG0 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Lima1Q9ERG0 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Lima1Q9ERG0 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Lima1Q9ERG0 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Lima1Q9ERG0 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Lima1Q9ERG0 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Lima1Q9ERG0 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Lima1Q9ERG0 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Lima1Q9ERG0 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Lima1Q9ERG0 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC17.96■□□□□ 0.47
Lima1Q9ERG0 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC17.96■□□□□ 0.47
Lima1Q9ERG0 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Lima1Q9ERG0 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Lima1Q9ERG0 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Lima1Q9ERG0 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC17.96■□□□□ 0.47
Lima1Q9ERG0 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Lima1Q9ERG0 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Lima1Q9ERG0 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Lima1Q9ERG0 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Lima1Q9ERG0 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Lima1Q9ERG0 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Lima1Q9ERG0 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC17.96■□□□□ 0.46
Lima1Q9ERG0 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Lima1Q9ERG0 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC17.95■□□□□ 0.46
Lima1Q9ERG0 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Lima1Q9ERG0 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC17.95■□□□□ 0.46
Lima1Q9ERG0 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Lima1Q9ERG0 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC17.95■□□□□ 0.46
Lima1Q9ERG0 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Lima1Q9ERG0 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC17.95■□□□□ 0.46
Lima1Q9ERG0 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC17.95■□□□□ 0.46
Lima1Q9ERG0 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Lima1Q9ERG0 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Lima1Q9ERG0 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Lima1Q9ERG0 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Lima1Q9ERG0 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC17.95■□□□□ 0.46
Lima1Q9ERG0 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Lima1Q9ERG0 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC17.95■□□□□ 0.46
Lima1Q9ERG0 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Lima1Q9ERG0 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Lima1Q9ERG0 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Lima1Q9ERG0 Gm15635-204ENSMUST00000208024 2539 ntBASIC17.95■□□□□ 0.46
Lima1Q9ERG0 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Lima1Q9ERG0 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Lima1Q9ERG0 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Lima1Q9ERG0 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
Lima1Q9ERG0 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC17.94■□□□□ 0.46
Lima1Q9ERG0 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Lima1Q9ERG0 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Lima1Q9ERG0 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC17.94■□□□□ 0.46
Lima1Q9ERG0 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Lima1Q9ERG0 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Lima1Q9ERG0 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Lima1Q9ERG0 Gm14281-201ENSMUST00000121700 1294 ntBASIC17.94■□□□□ 0.46
Lima1Q9ERG0 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Lima1Q9ERG0 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC17.94■□□□□ 0.46
Lima1Q9ERG0 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC17.94■□□□□ 0.46
Lima1Q9ERG0 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Lima1Q9ERG0 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Lima1Q9ERG0 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC17.94■□□□□ 0.46
Lima1Q9ERG0 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
Lima1Q9ERG0 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Lima1Q9ERG0 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Lima1Q9ERG0 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Lima1Q9ERG0 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Lima1Q9ERG0 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Lima1Q9ERG0 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Lima1Q9ERG0 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Lima1Q9ERG0 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Lima1Q9ERG0 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
Lima1Q9ERG0 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Lima1Q9ERG0 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Lima1Q9ERG0 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Lima1Q9ERG0 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Lima1Q9ERG0 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Lima1Q9ERG0 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Lima1Q9ERG0 AC122335.2-201ENSMUST00000213901 6181 ntBASIC17.92■□□□□ 0.46
Lima1Q9ERG0 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
Lima1Q9ERG0 Gm7860-201ENSMUST00000121190 879 ntBASIC17.92■□□□□ 0.46
Lima1Q9ERG0 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Lima1Q9ERG0 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Lima1Q9ERG0 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Lima1Q9ERG0 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Lima1Q9ERG0 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Lima1Q9ERG0 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Lima1Q9ERG0 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Lima1Q9ERG0 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Lima1Q9ERG0 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Lima1Q9ERG0 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Lima1Q9ERG0 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Lima1Q9ERG0 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Lima1Q9ERG0 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Lima1Q9ERG0 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC17.91■□□□□ 0.46
Lima1Q9ERG0 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Lima1Q9ERG0 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Lima1Q9ERG0 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Lima1Q9ERG0 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 16.7 ms