Protein–RNA interactions for Protein: Q9EQM3

Nkx2-4, Homeobox protein Nkx-2.4, mousemouse

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-4Q9EQM3 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Nkx2-4Q9EQM3 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Nkx2-4Q9EQM3 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Nkx2-4Q9EQM3 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Nkx2-4Q9EQM3 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Nkx2-4Q9EQM3 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Nkx2-4Q9EQM3 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Nkx2-4Q9EQM3 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Nkx2-4Q9EQM3 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Nkx2-4Q9EQM3 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Nkx2-4Q9EQM3 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC18.73■□□□□ 0.59
Nkx2-4Q9EQM3 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Nkx2-4Q9EQM3 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Nkx2-4Q9EQM3 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Nkx2-4Q9EQM3 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC18.72■□□□□ 0.59
Nkx2-4Q9EQM3 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Nkx2-4Q9EQM3 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Nkx2-4Q9EQM3 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Nkx2-4Q9EQM3 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Nkx2-4Q9EQM3 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Nkx2-4Q9EQM3 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Nkx2-4Q9EQM3 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Nkx2-4Q9EQM3 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Nkx2-4Q9EQM3 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Nkx2-4Q9EQM3 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Nkx2-4Q9EQM3 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Nkx2-4Q9EQM3 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Nkx2-4Q9EQM3 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Nkx2-4Q9EQM3 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Nkx2-4Q9EQM3 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Nkx2-4Q9EQM3 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Nkx2-4Q9EQM3 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Nkx2-4Q9EQM3 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Nkx2-4Q9EQM3 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Nkx2-4Q9EQM3 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
Nkx2-4Q9EQM3 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Nkx2-4Q9EQM3 Gm6277-202ENSMUST00000224036 2779 ntBASIC18.7■□□□□ 0.58
Nkx2-4Q9EQM3 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Nkx2-4Q9EQM3 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC18.7■□□□□ 0.58
Nkx2-4Q9EQM3 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Nkx2-4Q9EQM3 Gm38027-201ENSMUST00000192315 235 ntBASIC18.7■□□□□ 0.58
Nkx2-4Q9EQM3 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Nkx2-4Q9EQM3 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC18.7■□□□□ 0.58
Nkx2-4Q9EQM3 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Nkx2-4Q9EQM3 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Nkx2-4Q9EQM3 Gm8258-201ENSMUST00000055593 1449 ntBASIC18.7■□□□□ 0.58
Nkx2-4Q9EQM3 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Nkx2-4Q9EQM3 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Nkx2-4Q9EQM3 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC18.7■□□□□ 0.58
Nkx2-4Q9EQM3 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Nkx2-4Q9EQM3 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Nkx2-4Q9EQM3 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Nkx2-4Q9EQM3 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Nkx2-4Q9EQM3 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Nkx2-4Q9EQM3 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Nkx2-4Q9EQM3 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC18.69■□□□□ 0.58
Nkx2-4Q9EQM3 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Nkx2-4Q9EQM3 Gm27704-201ENSMUST00000185094 107 ntBASIC18.69■□□□□ 0.58
Nkx2-4Q9EQM3 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC18.69■□□□□ 0.58
Nkx2-4Q9EQM3 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Nkx2-4Q9EQM3 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Nkx2-4Q9EQM3 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Nkx2-4Q9EQM3 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Nkx2-4Q9EQM3 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Nkx2-4Q9EQM3 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Nkx2-4Q9EQM3 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC18.68■□□□□ 0.58
Nkx2-4Q9EQM3 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Nkx2-4Q9EQM3 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Nkx2-4Q9EQM3 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Nkx2-4Q9EQM3 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Nkx2-4Q9EQM3 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Nkx2-4Q9EQM3 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Nkx2-4Q9EQM3 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Nkx2-4Q9EQM3 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC18.67■□□□□ 0.58
Nkx2-4Q9EQM3 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Nkx2-4Q9EQM3 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
Nkx2-4Q9EQM3 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Nkx2-4Q9EQM3 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Nkx2-4Q9EQM3 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Nkx2-4Q9EQM3 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
Nkx2-4Q9EQM3 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC18.67■□□□□ 0.58
Nkx2-4Q9EQM3 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC18.67■□□□□ 0.58
Nkx2-4Q9EQM3 Gm28033-201ENSMUST00000184224 96 ntBASIC18.67■□□□□ 0.58
Nkx2-4Q9EQM3 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Nkx2-4Q9EQM3 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC18.67■□□□□ 0.58
Nkx2-4Q9EQM3 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Nkx2-4Q9EQM3 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Nkx2-4Q9EQM3 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Nkx2-4Q9EQM3 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Nkx2-4Q9EQM3 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Nkx2-4Q9EQM3 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Nkx2-4Q9EQM3 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Nkx2-4Q9EQM3 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Nkx2-4Q9EQM3 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Nkx2-4Q9EQM3 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Nkx2-4Q9EQM3 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Nkx2-4Q9EQM3 AC126028.2-201ENSMUST00000228100 1833 ntBASIC18.66■□□□□ 0.58
Nkx2-4Q9EQM3 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC18.66■□□□□ 0.58
Nkx2-4Q9EQM3 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Nkx2-4Q9EQM3 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC18.66■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 21.8 ms