Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Vps28Q9D1C8 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Vps28Q9D1C8 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Vps28Q9D1C8 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Vps28Q9D1C8 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Vps28Q9D1C8 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Vps28Q9D1C8 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Vps28Q9D1C8 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC18.62■□□□□ 0.57
Vps28Q9D1C8 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Vps28Q9D1C8 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Vps28Q9D1C8 Gm12896-201ENSMUST00000118430 226 ntBASIC18.62■□□□□ 0.57
Vps28Q9D1C8 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC18.62■□□□□ 0.57
Vps28Q9D1C8 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC18.62■□□□□ 0.57
Vps28Q9D1C8 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Vps28Q9D1C8 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Vps28Q9D1C8 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Vps28Q9D1C8 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC18.62■□□□□ 0.57
Vps28Q9D1C8 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Vps28Q9D1C8 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Vps28Q9D1C8 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Vps28Q9D1C8 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Vps28Q9D1C8 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Vps28Q9D1C8 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Vps28Q9D1C8 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Vps28Q9D1C8 Gm15853-202ENSMUST00000195518 2041 ntBASIC18.61■□□□□ 0.57
Vps28Q9D1C8 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Vps28Q9D1C8 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Vps28Q9D1C8 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Vps28Q9D1C8 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Vps28Q9D1C8 AC140264.2-202ENSMUST00000218746 817 ntBASIC18.61■□□□□ 0.57
Vps28Q9D1C8 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Vps28Q9D1C8 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Vps28Q9D1C8 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Vps28Q9D1C8 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Vps28Q9D1C8 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Vps28Q9D1C8 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Vps28Q9D1C8 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Vps28Q9D1C8 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Vps28Q9D1C8 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Vps28Q9D1C8 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Vps28Q9D1C8 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Vps28Q9D1C8 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Vps28Q9D1C8 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
Vps28Q9D1C8 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Vps28Q9D1C8 Gm20760-201ENSMUST00000179197 648 ntBASIC18.6■□□□□ 0.57
Vps28Q9D1C8 Gm37856-201ENSMUST00000191634 999 ntBASIC18.6■□□□□ 0.57
Vps28Q9D1C8 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC18.6■□□□□ 0.57
Vps28Q9D1C8 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Vps28Q9D1C8 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Vps28Q9D1C8 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Vps28Q9D1C8 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Vps28Q9D1C8 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Vps28Q9D1C8 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC18.59■□□□□ 0.57
Vps28Q9D1C8 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Vps28Q9D1C8 Gm43182-201ENSMUST00000199476 2528 ntBASIC18.59■□□□□ 0.57
Vps28Q9D1C8 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Vps28Q9D1C8 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Vps28Q9D1C8 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC18.59■□□□□ 0.57
Vps28Q9D1C8 Trmt13-210ENSMUST00000198454 880 ntBASIC18.59■□□□□ 0.57
Vps28Q9D1C8 AC135637.1-201ENSMUST00000227750 365 ntBASIC18.59■□□□□ 0.57
Vps28Q9D1C8 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Vps28Q9D1C8 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Vps28Q9D1C8 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Vps28Q9D1C8 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Vps28Q9D1C8 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC18.59■□□□□ 0.57
Vps28Q9D1C8 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Vps28Q9D1C8 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Vps28Q9D1C8 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Vps28Q9D1C8 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Vps28Q9D1C8 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Vps28Q9D1C8 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
Vps28Q9D1C8 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC18.58■□□□□ 0.57
Vps28Q9D1C8 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC18.58■□□□□ 0.57
Vps28Q9D1C8 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC18.58■□□□□ 0.57
Vps28Q9D1C8 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC18.58■□□□□ 0.56
Vps28Q9D1C8 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC18.58■□□□□ 0.56
Vps28Q9D1C8 Gm22325-201ENSMUST00000158904 308 ntBASIC18.58■□□□□ 0.56
Vps28Q9D1C8 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Vps28Q9D1C8 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
Vps28Q9D1C8 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Vps28Q9D1C8 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC18.58■□□□□ 0.56
Vps28Q9D1C8 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Vps28Q9D1C8 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Vps28Q9D1C8 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Vps28Q9D1C8 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Vps28Q9D1C8 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Vps28Q9D1C8 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Vps28Q9D1C8 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Vps28Q9D1C8 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Vps28Q9D1C8 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC18.57■□□□□ 0.56
Vps28Q9D1C8 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Vps28Q9D1C8 Gm27275-201ENSMUST00000184318 272 ntBASIC18.57■□□□□ 0.56
Vps28Q9D1C8 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC18.57■□□□□ 0.56
Vps28Q9D1C8 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
Vps28Q9D1C8 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Vps28Q9D1C8 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Vps28Q9D1C8 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
Vps28Q9D1C8 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Vps28Q9D1C8 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Vps28Q9D1C8 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC18.56■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 18.2 ms