Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Use1Q9CQ56 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Use1Q9CQ56 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Use1Q9CQ56 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Use1Q9CQ56 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Use1Q9CQ56 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
Use1Q9CQ56 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
Use1Q9CQ56 Gm45141-201ENSMUST00000206502 1888 ntBASIC17.22■□□□□ 0.35
Use1Q9CQ56 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Use1Q9CQ56 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
Use1Q9CQ56 Gm45606-201ENSMUST00000209836 2795 ntBASIC17.22■□□□□ 0.35
Use1Q9CQ56 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Use1Q9CQ56 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC17.21■□□□□ 0.35
Use1Q9CQ56 Gm9194-201ENSMUST00000220749 1447 ntBASIC17.21■□□□□ 0.35
Use1Q9CQ56 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Use1Q9CQ56 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC17.21■□□□□ 0.35
Use1Q9CQ56 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC17.21■□□□□ 0.35
Use1Q9CQ56 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC17.21■□□□□ 0.35
Use1Q9CQ56 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Use1Q9CQ56 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Use1Q9CQ56 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Use1Q9CQ56 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Use1Q9CQ56 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC17.21■□□□□ 0.35
Use1Q9CQ56 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
Use1Q9CQ56 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
Use1Q9CQ56 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Use1Q9CQ56 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Use1Q9CQ56 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
Use1Q9CQ56 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Use1Q9CQ56 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Use1Q9CQ56 Gm10167-201ENSMUST00000150411 1479 ntBASIC17.2■□□□□ 0.34
Use1Q9CQ56 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Use1Q9CQ56 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Use1Q9CQ56 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC17.2■□□□□ 0.34
Use1Q9CQ56 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Use1Q9CQ56 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Use1Q9CQ56 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Use1Q9CQ56 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Use1Q9CQ56 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
Use1Q9CQ56 Gm9988-201ENSMUST00000069786 435 ntBASIC17.2■□□□□ 0.34
Use1Q9CQ56 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Use1Q9CQ56 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Use1Q9CQ56 Dmtn-207ENSMUST00000228001 2437 ntBASIC17.2■□□□□ 0.34
Use1Q9CQ56 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Use1Q9CQ56 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Use1Q9CQ56 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Use1Q9CQ56 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Use1Q9CQ56 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Use1Q9CQ56 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC17.19■□□□□ 0.34
Use1Q9CQ56 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
Use1Q9CQ56 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Use1Q9CQ56 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Use1Q9CQ56 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Use1Q9CQ56 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC17.19■□□□□ 0.34
Use1Q9CQ56 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Use1Q9CQ56 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC17.19■□□□□ 0.34
Use1Q9CQ56 CT010467.1-202ENSMUST00000205406 714 ntBASIC17.19■□□□□ 0.34
Use1Q9CQ56 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC17.19■□□□□ 0.34
Use1Q9CQ56 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Use1Q9CQ56 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC17.19■□□□□ 0.34
Use1Q9CQ56 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Use1Q9CQ56 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
Use1Q9CQ56 Gm44832-201ENSMUST00000208849 2303 ntBASIC17.19■□□□□ 0.34
Use1Q9CQ56 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
Use1Q9CQ56 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Use1Q9CQ56 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Use1Q9CQ56 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Use1Q9CQ56 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Use1Q9CQ56 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Use1Q9CQ56 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Use1Q9CQ56 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Use1Q9CQ56 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Use1Q9CQ56 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
Use1Q9CQ56 Gm26971-201ENSMUST00000182423 1072 ntBASIC17.18■□□□□ 0.34
Use1Q9CQ56 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC17.18■□□□□ 0.34
Use1Q9CQ56 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Use1Q9CQ56 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Use1Q9CQ56 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Use1Q9CQ56 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Use1Q9CQ56 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Use1Q9CQ56 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Use1Q9CQ56 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Use1Q9CQ56 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Use1Q9CQ56 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Use1Q9CQ56 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC17.17■□□□□ 0.34
Use1Q9CQ56 Gm21168-201ENSMUST00000199646 1096 ntBASIC17.17■□□□□ 0.34
Use1Q9CQ56 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Use1Q9CQ56 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Use1Q9CQ56 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
Use1Q9CQ56 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Use1Q9CQ56 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Use1Q9CQ56 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
Use1Q9CQ56 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Use1Q9CQ56 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Use1Q9CQ56 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC17.16■□□□□ 0.34
Use1Q9CQ56 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Use1Q9CQ56 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC17.16■□□□□ 0.34
Use1Q9CQ56 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC17.16■□□□□ 0.34
Use1Q9CQ56 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
Use1Q9CQ56 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 30.9 ms