Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Msh4Q99MT2 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC17.71■□□□□ 0.43
Msh4Q99MT2 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Msh4Q99MT2 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Msh4Q99MT2 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Msh4Q99MT2 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.42
Msh4Q99MT2 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Msh4Q99MT2 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Msh4Q99MT2 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Msh4Q99MT2 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC17.7■□□□□ 0.42
Msh4Q99MT2 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC17.7■□□□□ 0.42
Msh4Q99MT2 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC17.7■□□□□ 0.42
Msh4Q99MT2 Gm26971-201ENSMUST00000182423 1072 ntBASIC17.7■□□□□ 0.42
Msh4Q99MT2 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Msh4Q99MT2 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC17.7■□□□□ 0.42
Msh4Q99MT2 CT025689.6-201ENSMUST00000224991 1104 ntBASIC17.7■□□□□ 0.42
Msh4Q99MT2 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Msh4Q99MT2 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Msh4Q99MT2 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Msh4Q99MT2 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Msh4Q99MT2 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC17.7■□□□□ 0.42
Msh4Q99MT2 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Msh4Q99MT2 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
Msh4Q99MT2 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC17.7■□□□□ 0.42
Msh4Q99MT2 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Msh4Q99MT2 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
Msh4Q99MT2 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC17.69■□□□□ 0.42
Msh4Q99MT2 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
Msh4Q99MT2 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Msh4Q99MT2 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
Msh4Q99MT2 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Msh4Q99MT2 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
Msh4Q99MT2 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Msh4Q99MT2 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Msh4Q99MT2 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Msh4Q99MT2 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC17.69■□□□□ 0.42
Msh4Q99MT2 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC17.69■□□□□ 0.42
Msh4Q99MT2 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
Msh4Q99MT2 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC17.69■□□□□ 0.42
Msh4Q99MT2 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Msh4Q99MT2 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Msh4Q99MT2 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Msh4Q99MT2 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Msh4Q99MT2 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Msh4Q99MT2 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Msh4Q99MT2 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Msh4Q99MT2 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Msh4Q99MT2 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Msh4Q99MT2 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Msh4Q99MT2 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC17.68■□□□□ 0.42
Msh4Q99MT2 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Msh4Q99MT2 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Msh4Q99MT2 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
Msh4Q99MT2 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Msh4Q99MT2 Gm13148-201ENSMUST00000118892 745 ntBASIC17.68■□□□□ 0.42
Msh4Q99MT2 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Msh4Q99MT2 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC17.68■□□□□ 0.42
Msh4Q99MT2 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Msh4Q99MT2 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Msh4Q99MT2 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Msh4Q99MT2 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Msh4Q99MT2 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Msh4Q99MT2 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Msh4Q99MT2 Gm42939-201ENSMUST00000197514 2205 ntBASIC17.67■□□□□ 0.42
Msh4Q99MT2 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Msh4Q99MT2 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Msh4Q99MT2 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Msh4Q99MT2 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Msh4Q99MT2 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC17.67■□□□□ 0.42
Msh4Q99MT2 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Msh4Q99MT2 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Msh4Q99MT2 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Msh4Q99MT2 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
Msh4Q99MT2 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Msh4Q99MT2 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Msh4Q99MT2 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Msh4Q99MT2 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Msh4Q99MT2 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Msh4Q99MT2 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Msh4Q99MT2 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Msh4Q99MT2 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Msh4Q99MT2 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Msh4Q99MT2 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Msh4Q99MT2 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Msh4Q99MT2 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Msh4Q99MT2 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Msh4Q99MT2 Gm6211-202ENSMUST00000167849 925 ntBASIC17.66■□□□□ 0.42
Msh4Q99MT2 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Msh4Q99MT2 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Msh4Q99MT2 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Msh4Q99MT2 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Msh4Q99MT2 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Msh4Q99MT2 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC17.66■□□□□ 0.42
Msh4Q99MT2 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Msh4Q99MT2 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Msh4Q99MT2 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Msh4Q99MT2 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Msh4Q99MT2 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Msh4Q99MT2 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Msh4Q99MT2 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms